myRT

myRT report for GCA_001991155.1_ASM199115v1

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Seq: MUQB01000053.1 Burkholderia cenocepacia strain VC6579 VC6579_contig-8, whole genome shotgun sequence (141329 bp)
Overview 1 RT 1: 125549-129364 bp Neighborhood of RT #1 [125549, 129369] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125549-125878 bp Ori: ONO51631.1 Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: domain Description: Histone_HNS Location: 1 25570-1 25807 bp Feature: gene Location: 126025-126231 bp Feature: gene Location: 126204-127553 bp Ori: ONO51633.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 26669-1 27305 bp Feature: gene Location: 127807-128379 bp Ori: ONO51634.1 Feature: domain Description: FIN Location: 127993-128344 bp Feature: domain Description: FIN Location: 1 27993-1 28344 bp Feature: gene Location: 128614-129369 bp Ori: ONO51635.1 Feature: domain Description: his_ut_repres Location: 128692-129364 bp Feature: domain Description: his_ut_repres Location: 1 28692-1 29364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQB01000023.1 Burkholderia cenocepacia strain VC6579 VC6579_contig-8000003, whole genome shotgun sequence (253390 bp)
Overview 1 RT 1: 208710-213318 bp Neighborhood of RT #1 [208710, 213326] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 208710-208904 bp Feature: gene Location: 209284-210318 bp Ori: ONO57495.1 Feature: domain Description: COG3547 Location: 209299-210262 bp Feature: domain Description: COG3547 Location: 2 092 99-2 102 62 bp Feature: gene Location: 210489-211856 bp Ori: ONO57496.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210822-211437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1082 2 -2 11437 bp Feature: domain Description: GIIM Note: maturase Location: 211497-211698 bp Feature: domain Description: GIIM Note: maturase Location: 2 11497-2 11698 bp Feature: gene Location: 211964-212851 bp Ori: ONO57497.1 Feature: domain Description: RsmI Location: 212012-212825 bp Feature: domain Description: RsmI Location: 2 12 012 -2 12 82 5 bp Feature: gene Location: 212850-213326 bp Ori: ONO57498.1 Feature: domain Description: PRK14673 Location: 212901-213318 bp Feature: domain Description: PRK14673 Location: 2 12 901-2 13318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUQB01000019.1 Burkholderia cenocepacia strain VC6579 VC6579_contig-4000003, whole genome shotgun sequence (95981 bp)
Overview 1 RT 1: 90587-95916 bp Neighborhood of RT #1 [90587, 95981] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 90587-91276 bp Feature: gene Location: 91528-93543 bp Ori: ONO58199.1 Feature: domain Description: HATPase_c_3 Location: 91597-91921 bp Feature: domain Description: HATPase_c_3 Location: 91597-91921 bp Feature: gene Location: 94071-95525 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94080-94554 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94080-94554 bp Feature: gene Location: 95574-95981 bp Ori: ONO58207.1 Feature: domain Description: rve_3 Location: 95718-95916 bp Feature: domain Description: rve_3 Location: 95718-95916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUQB01000055.1 Burkholderia cenocepacia strain VC6579 VC6579_contig-2000008, whole genome shotgun sequence (45966 bp)
Overview 1 RT 1: 3445-10465 bp Neighborhood of RT #1 [3445, 10465] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 3445-4110 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: GIIM Note: maturase Location: 34 4 8-3673 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4 063 bp Feature: gene Location: 4256-7171 bp Ori: ONO51212.1 Feature: domain Description: DUF4158 Location: 4295-4760 bp Feature: domain Description: DUF4 158 Location: 4 295-4 760 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 594 8-7094 bp Feature: gene Location: 7302-8372 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764 7-8298 bp Feature: gene Location: 8968-10023 bp Ori: ONO51213.1 Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: domain Description: DEXHc_Snf Location: 9187-94 4 2 bp Feature: gene Location: 10160-10465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUQB01000068.1 Burkholderia cenocepacia strain VC6579 VC6579_contig-1000009, whole genome shotgun sequence (263653 bp)
Overview 1 RT 1: 198302-202714 bp Neighborhood of RT #1 [198302, 202714] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 198302-198766 bp Ori: ONO49053.1 Feature: domain Description: DUF1566 Location: 198563-198743 bp Feature: domain Description: DUF15 66 Location: 1985 63-198743 bp Feature: gene Location: 198781-199137 bp Ori: ONO49054.1 Feature: domain Description: Avd_like Location: 198808-199114 bp Feature: domain Description: Avd_like Location: 198808-199114 bp Feature: gene Location: 199481-200479 bp Ori: ONO49055.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 199574-200261 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1995 74-200261 bp Feature: gene Location: 200538-202439 bp Ori: ONO49056.1 Feature: domain Description: Dcm Location: 200571-201177 bp Feature: domain Description: Dcm Location: 2005 71-201177 bp Feature: domain Description: Dcm Location: 202176-202335 bp Feature: domain Description: Dcm Location: 202176-202335 bp Feature: gene Location: 202454-202714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUQB01000054.1 Burkholderia cenocepacia strain VC6579 VC6579_contig-1000008, whole genome shotgun sequence (69037 bp)
Overview 1 RT 1: 1-3666 bp Neighborhood of RT #1 [1, 3674] COG3547 RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 1-953 bp Ori: ONO51330.1 Feature: domain Description: COG3547 Location: 16-949 bp Feature: domain Description: COG3547 Location: 16 -949 bp Feature: gene Location: 1124-2491 bp Ori: ONO51331.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-2072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-2072 bp Feature: domain Description: GIIM Note: maturase Location: 2132-2333 bp Feature: domain Description: GIIM Note: maturase Location: 2132-2333 bp Feature: gene Location: 2772-3131 bp Ori: ONO51332.1 Feature: domain Description: COG4315 Location: 2793-3129 bp Feature: domain Description: COG4315 Location: 2793-3129 bp Feature: gene Location: 3159-3674 bp Ori: ONO51333.1 Feature: domain Description: PRK12511 Location: 3171-3666 bp Feature: domain Description: PRK12511 Location: 3171-36 6 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)