myRT

myRT report for GCA_001991175.1_ASM199117v1

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Seq: MUQC01000102.1 Burkholderia cenocepacia strain VC6905 VC6905_contig-5000013, whole genome shotgun sequence (42001 bp)
Overview 1 RT 1: 1436-6044 bp Neighborhood of RT #1 [1436, 6052] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1436-1630 bp Feature: gene Location: 2010-3044 bp Ori: ONO49648.1 Feature: domain Description: COG3547 Location: 2025-2988 bp Feature: domain Description: COG3547 Location: 2025-2988 bp Feature: gene Location: 3215-4582 bp Ori: ONO49649.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-41 63 bp Feature: domain Description: GIIM Note: maturase Location: 4223-4424 bp Feature: domain Description: GIIM Note: maturase Location: 4223-4424 bp Feature: gene Location: 4690-5577 bp Ori: ONO49650.1 Feature: domain Description: RsmI Location: 4738-5551 bp Feature: domain Description: RsmI Location: 4738-5551 bp Feature: gene Location: 5576-6052 bp Ori: ONO49651.1 Feature: domain Description: PRK14673 Location: 5627-6044 bp Feature: domain Description: PRK1 4673 Location: 5627-6044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUQC01000046.1 Burkholderia cenocepacia strain VC6905 VC6905_contig-2000006, whole genome shotgun sequence (41584 bp)
Overview 1 RT 1: 146-6355 bp Neighborhood of RT #1 [146, 6355] DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 146-3061 bp Ori: ONO59117.1 Feature: domain Description: DUF4158 Location: 185-650 bp Feature: domain Description: DUF4158 Location: 185-650 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1838-2984 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1838-2 984 bp Feature: gene Location: 3192-4262 bp Feature: domain Description: RVT_N Location: 3249-3486 bp Feature: domain Description: RVT_N Location: 32 49-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3537-4188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3537-4188 bp Feature: gene Location: 4858-5913 bp Ori: ONO59118.1 Feature: domain Description: DEXHc_Snf Location: 5077-5332 bp Feature: domain Description: DEXHc_Snf Location: 5077-5332 bp Feature: gene Location: 6050-6355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUQC01000106.1 Burkholderia cenocepacia strain VC6905 VC6905_contig-10000013, whole genome shotgun sequence (143657 bp)
Overview 1 RT 1: 109798-114210 bp Neighborhood of RT #1 [109798, 114210] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 109798-110262 bp Ori: ONO49264.1 Feature: domain Description: DUF1566 Location: 110059-110239 bp Feature: domain Description: DUF1566 Location: 110059-11023 9 bp Feature: gene Location: 110277-110633 bp Ori: ONO49265.1 Feature: domain Description: Avd_like Location: 110304-110610 bp Feature: domain Description: Avd_like Location: 1103 04-110610 bp Feature: gene Location: 110977-111975 bp Ori: ONO49266.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111070-111757 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111070-111757 bp Feature: gene Location: 112034-113935 bp Ori: ONO49267.1 Feature: domain Description: Dcm Location: 112067-112673 bp Feature: domain Description: Dcm Location: 112067-112673 bp Feature: domain Description: Dcm Location: 113672-113831 bp Feature: domain Description: Dcm Location: 113 672-113 83 1 bp Feature: gene Location: 113950-114210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUQC01000078.1 Burkholderia cenocepacia strain VC6905 VC6905_contig-4000010, whole genome shotgun sequence (15439 bp)
Overview 1 RT 1: 10072-15439 bp Neighborhood of RT #1 [10072, 15439] HATPase_c_3 RVT-UG5 Feature: gene Location: 10072-10761 bp Feature: gene Location: 11013-13028 bp Ori: ONO53688.1 Feature: domain Description: HATPase_c_3 Location: 11082-11406 bp Feature: domain Description: HATPase_c_3 Location: 11082-114 06 bp Feature: gene Location: 13556-15011 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13565-14039 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13565-14 039 bp Feature: gene Location: 15060-15439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5

Seq: MUQC01000081.1 Burkholderia cenocepacia strain VC6905 VC6905_contig-8000010, whole genome shotgun sequence (277086 bp)
Overview 1 RT 1: 11793-15542 bp Neighborhood of RT #1 [11793, 15613] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11793-12548 bp Ori: ONO53267.1 Feature: domain Description: his_ut_repres Location: 11871-12543 bp Feature: domain Description: his_ut_repres Location: 11871-125 43 bp Feature: gene Location: 12783-13355 bp Ori: ONO53268.1 Feature: domain Description: FIN Location: 12969-13320 bp Feature: domain Description: FIN Location: 12969-13320 bp Feature: gene Location: 13609-14958 bp Ori: ONO53269.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14074-14710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14074-14710 bp Feature: gene Location: 14931-15137 bp Feature: gene Location: 15284-15613 bp Ori: ONO53271.1 Feature: domain Description: Histone_HNS Location: 15305-15542 bp Feature: domain Description: Histone_HNS Location: 15 305 -15 5 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)