myRT

myRT report for GCA_001991195.1_ASM199119v1

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Seq: MUQE01000028.1 Burkholderia cenocepacia strain VC7485 VC7485_contig-8000003, whole genome shotgun sequence (156518 bp)
Overview 1 RT 1: 140377-144192 bp Neighborhood of RT #1 [140377, 144197] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 140377-140706 bp Ori: ONO78029.1 Feature: domain Description: Histone_HNS Location: 140398-140635 bp Feature: domain Description: Histone_HNS Location: 1 40398-1 40635 bp Feature: gene Location: 140853-141059 bp Feature: gene Location: 141032-142381 bp Ori: ONO78031.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141497-142133 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 41 497-1 421 33 bp Feature: gene Location: 142635-143207 bp Ori: ONO78032.1 Feature: domain Description: FIN Location: 142821-143172 bp Feature: domain Description: FIN Location: 1 42821 -1 431 72 bp Feature: gene Location: 143442-144197 bp Ori: ONO78033.1 Feature: domain Description: his_ut_repres Location: 143520-144192 bp Feature: domain Description: his_ut_repres Location: 1 43520-1 441 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQE01000049.1 Burkholderia cenocepacia strain VC7485 VC7485_contig-9000005, whole genome shotgun sequence (194794 bp)
Overview 1 RT 1: 110716-115324 bp Neighborhood of RT #1 [110716, 115332] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 110716-110910 bp Feature: gene Location: 111290-112324 bp Ori: ONO74103.1 Feature: domain Description: COG3547 Location: 111305-112268 bp Feature: domain Description: COG3547 Location: 111305-112 2 68 bp Feature: gene Location: 112495-113862 bp Ori: ONO74104.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112828-113443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 82 8-113443 bp Feature: domain Description: GIIM Note: maturase Location: 113503-113704 bp Feature: domain Description: GIIM Note: maturase Location: 113503-113704 bp Feature: gene Location: 113970-114857 bp Ori: ONO74105.1 Feature: domain Description: RsmI Location: 114018-114831 bp Feature: domain Description: RsmI Location: 114018-114831 bp Feature: gene Location: 114856-115332 bp Ori: ONO74106.1 Feature: domain Description: PRK14673 Location: 114907-115324 bp Feature: domain Description: PRK14673 Location: 114907-11532 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUQE01000018.1 Burkholderia cenocepacia strain VC7485 VC7485_contig-3000002, whole genome shotgun sequence (164068 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Ori: ONO79416.1 Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 12400-13 072 bp Feature: gene Location: 13312-13884 bp Ori: ONO79417.1 Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 13 498-13 849 bp Feature: gene Location: 14138-15487 bp Ori: ONO79418.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603 -1523 9 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Ori: ONO79420.1 Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 1583 4-16071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUQE01000039.1 Burkholderia cenocepacia strain VC7485 VC7485_contig-10000004, whole genome shotgun sequence (169870 bp)
Overview 1 RT 1: 35594-42567 bp Neighborhood of RT #1 [35594, 42614] DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 35594-35899 bp Feature: gene Location: 36036-37091 bp Ori: ONO75591.1 Feature: domain Description: DEXHc_Snf Location: 36255-36510 bp Feature: domain Description: DEXHc_Snf Location: 36255-36510 bp Feature: gene Location: 37687-38757 bp Feature: domain Description: RVT_N Location: 37744-37981 bp Feature: domain Description: RVT_N Location: 3774 4 -37981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38032-38683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38032-38683 bp Feature: gene Location: 38888-41803 bp Ori: ONO75717.1 Feature: domain Description: DUF4158 Location: 38927-39392 bp Feature: domain Description: DUF4 158 Location: 38927-39392 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 40580-41726 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4 0580-4 1726 bp Feature: gene Location: 41949-42614 bp Feature: domain Description: GIIM Note: maturase Location: 41952-42177 bp Feature: domain Description: GIIM Note: maturase Location: 4 1952-4 2177 bp Feature: domain Description: HNHc Note: nucleases Location: 42411-42567 bp Feature: domain Description: HNHc Note: nucleases Location: 4 24 11-4 2567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUQE01000024.1 Burkholderia cenocepacia strain VC7485 VC7485_contig-4000003, whole genome shotgun sequence (217956 bp)
Overview 1 RT 1: 103758-108147 bp Neighborhood of RT #1 [103758, 108170] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 103758-104018 bp Feature: gene Location: 104033-105934 bp Ori: ONO78547.1 Feature: domain Description: Dcm Location: 104066-104672 bp Feature: domain Description: Dcm Location: 104066-104672 bp Feature: domain Description: Dcm Location: 105671-105830 bp Feature: domain Description: Dcm Location: 105 671-105 830 bp Feature: gene Location: 105993-106991 bp Ori: ONO78434.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 106086-106773 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 106086-106773 bp Feature: gene Location: 107335-107691 bp Ori: ONO78435.1 Feature: domain Description: Avd_like Location: 107362-107668 bp Feature: domain Description: Avd_like Location: 107362-107668 bp Feature: gene Location: 107706-108170 bp Ori: ONO78436.1 Feature: domain Description: DUF1566 Location: 107967-108147 bp Feature: domain Description: DUF15 66 Location: 107967-108147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUQE01000030.1 Burkholderia cenocepacia strain VC7485 VC7485_contig-1000004, whole genome shotgun sequence (46795 bp)
Overview 1 RT 1: 1-5357 bp Neighborhood of RT #1 [1, 5357] RVT-UG5 HATPase_c_3 Feature: gene Location: 1-370 bp Feature: gene Location: 419-1873 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 428-902 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 428-902 bp Feature: gene Location: 2401-4416 bp Ori: ONO77425.1 Feature: domain Description: HATPase_c_3 Location: 2470-2794 bp Feature: domain Description: HATPase_c_3 Location: 2470-2794 bp Feature: gene Location: 4668-5357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, HATPase_c_3 (pfam13589)