myRT

myRT report for GCA_001991215.1_ASM199121v1

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Seq: MUQG01000093.1 Burkholderia cenocepacia strain VC7489 VC7489_contig-8000011, whole genome shotgun sequence (42005 bp)
Overview 1 RT 1: 35951-40567 bp Neighborhood of RT #1 [35951, 40567] PRK14673 RsmI RVT-GII GIIM COG3547 Feature: gene Location: 35951-36427 bp Ori: ONO67331.1 Feature: domain Description: PRK14673 Location: 36002-36419 bp Feature: domain Description: PRK1 4673 Location: 36002-3641 9 bp Feature: gene Location: 36426-37313 bp Ori: ONO67332.1 Feature: domain Description: RsmI Location: 36474-37287 bp Feature: domain Description: RsmI Location: 36474-37287 bp Feature: gene Location: 37421-38788 bp Ori: ONO67333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37754-38369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37754-38369 bp Feature: domain Description: GIIM Note: maturase Location: 38429-38630 bp Feature: domain Description: GIIM Note: maturase Location: 38429-38630 bp Feature: gene Location: 38959-39993 bp Ori: ONO67334.1 Feature: domain Description: COG3547 Location: 38974-39937 bp Feature: domain Description: COG3547 Location: 38974-39937 bp Feature: gene Location: 40373-40567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUQG01000024.1 Burkholderia cenocepacia strain VC7489 VC7489_contig-4000003, whole genome shotgun sequence (141366 bp)
Overview 1 RT 1: 11961-15710 bp Neighborhood of RT #1 [11961, 15781] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11961-12716 bp Ori: ONO79091.1 Feature: domain Description: his_ut_repres Location: 12039-12711 bp Feature: domain Description: his_ut_repres Location: 12 039-12 711 bp Feature: gene Location: 12951-13523 bp Ori: ONO79092.1 Feature: domain Description: FIN Location: 13137-13488 bp Feature: domain Description: FIN Location: 13137-13488 bp Feature: gene Location: 13777-15126 bp Ori: ONO79093.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14242-14878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142 42 -14878 bp Feature: gene Location: 15099-15305 bp Feature: gene Location: 15452-15781 bp Ori: ONO79095.1 Feature: domain Description: Histone_HNS Location: 15473-15710 bp Feature: domain Description: Histone_HNS Location: 15473-15710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUQG01000061.1 Burkholderia cenocepacia strain VC7489 VC7489_contig-1000008, whole genome shotgun sequence (45331 bp)
Overview 1 RT 1: 3445-10465 bp Neighborhood of RT #1 [3445, 10465] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 3445-4110 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: GIIM Note: maturase Location: 3 448-3 673 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: domain Description: HNHc Note: nucleases Location: 3 907-4063 bp Feature: gene Location: 4256-7171 bp Ori: ONO72259.1 Feature: domain Description: DUF4158 Location: 4295-4760 bp Feature: domain Description: DUF4158 Location: 4295-4760 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: gene Location: 7302-8372 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: domain Description: RVT_N Location: 73 59-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: gene Location: 8968-10023 bp Ori: ONO72260.1 Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: gene Location: 10160-10465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUQG01000028.1 Burkholderia cenocepacia strain VC7489 VC7489_contig-1000004, whole genome shotgun sequence (46831 bp)
Overview 1 RT 1: 1-5395 bp Neighborhood of RT #1 [1, 5395] rve_3 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-408 bp Ori: ONO78231.1 Feature: domain Description: rve_3 Location: 145-343 bp Feature: domain Description: rve_3 Location: 14 5-34 3 bp Feature: gene Location: 457-1911 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 66-94 0 bp Feature: gene Location: 2439-4454 bp Ori: ONO78232.1 Feature: domain Description: HATPase_c_3 Location: 2508-2832 bp Feature: domain Description: HATPase_c_3 Location: 2508-2832 bp Feature: gene Location: 4706-5395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, HATPase_c_3 (pfam13589)