myRT

myRT report for GCA_001991235.1_ASM199123v1

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Seq: MUQJ01000096.1 Burkholderia cenocepacia strain VC9041 VC9041_contig-10000009, whole genome shotgun sequence (1053 bp)
Overview 1 RT 1: 1-847 bp Neighborhood of RT #1 [1, 900] RVT-UG5 HTH_Tnp_1 Feature: gene Location: 1-559 bp Ori: ONP10645.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4-448 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4-448 bp Feature: gene Location: 637-900 bp Ori: ONP10644.1 Feature: domain Description: HTH_Tnp_1 Location: 643-847 bp Feature: domain Description: HTH_Tnp_1 Location: 643-847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, HTH_Tnp_1 (pfam01527)

Seq: MUQJ01000076.1 Burkholderia cenocepacia strain VC9041 VC9041_contig-2000008, whole genome shotgun sequence (169149 bp)
Overview 1 RT 1: 126898-133918 bp Neighborhood of RT #1 [126898, 133918] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 126898-127563 bp Feature: domain Description: GIIM Note: maturase Location: 126901-127126 bp Feature: domain Description: GIIM Note: maturase Location: 12 6901-12 712 6 bp Feature: domain Description: HNHc Note: nucleases Location: 127360-127516 bp Feature: domain Description: HNHc Note: nucleases Location: 12 7360-12 7516 bp Feature: gene Location: 127709-130624 bp Ori: ONP13690.1 Feature: domain Description: DUF4158 Location: 127748-128213 bp Feature: domain Description: DUF4158 Location: 12 7748-12 82 13 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 129401-130547 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 12 9401-130547 bp Feature: gene Location: 130755-131825 bp Feature: domain Description: RVT_N Location: 130812-131049 bp Feature: domain Description: RVT_N Location: 130812 -131049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131100-131751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131100-131751 bp Feature: gene Location: 132421-133476 bp Ori: ONP13641.1 Feature: domain Description: DEXHc_Snf Location: 132640-132895 bp Feature: domain Description: DEXHc_Snf Location: 132 640-132 895 bp Feature: gene Location: 133613-133918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUQJ01000070.1 Burkholderia cenocepacia strain VC9041 VC9041_contig-2000007, whole genome shotgun sequence (267046 bp)
Overview 1 RT 1: 251266-255081 bp Neighborhood of RT #1 [251266, 255086] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 251266-251595 bp Ori: ONP15316.1 Feature: domain Description: Histone_HNS Location: 251287-251524 bp Feature: domain Description: Histone_HNS Location: 251287-251524 bp Feature: gene Location: 251742-251948 bp Feature: gene Location: 251921-253270 bp Ori: ONP15318.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 252386-253022 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2523 86-253 022 bp Feature: gene Location: 253524-254096 bp Ori: ONP15319.1 Feature: domain Description: FIN Location: 253710-254061 bp Feature: domain Description: FIN Location: 253 710-254061 bp Feature: gene Location: 254331-255086 bp Ori: ONP15320.1 Feature: domain Description: his_ut_repres Location: 254409-255081 bp Feature: domain Description: his_ut_repres Location: 254409-255081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQJ01000042.1 Burkholderia cenocepacia strain VC9041 VC9041_contig-11000003, whole genome shotgun sequence (250138 bp)
Overview 1 RT 1: 208443-212764 bp Neighborhood of RT #1 [208443, 212772] COG3547 RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 208443-208637 bp Feature: gene Location: 209017-210051 bp Ori: ONP20442.1 Feature: domain Description: COG3547 Location: 209032-209995 bp Feature: domain Description: COG354 7 Location: 209032-209995 bp Feature: gene Location: 210222-211589 bp Ori: ONP20443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210555-211170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210555-211170 bp Feature: domain Description: GIIM Note: maturase Location: 211230-211431 bp Feature: domain Description: GIIM Note: maturase Location: 211230-2114 31 bp Feature: gene Location: 211870-212229 bp Ori: ONP20444.1 Feature: domain Description: COG4315 Location: 211891-212227 bp Feature: domain Description: COG4 315 Location: 211891-212227 bp Feature: gene Location: 212257-212772 bp Ori: ONP20445.1 Feature: domain Description: PRK12511 Location: 212269-212764 bp Feature: domain Description: PRK12511 Location: 212269-212764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: MUQJ01000023.1 Burkholderia cenocepacia strain VC9041 VC9041_contig-9000001, whole genome shotgun sequence (143655 bp)
Overview 1 RT 1: 29448-33837 bp Neighborhood of RT #1 [29448, 33860] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29448-29708 bp Feature: gene Location: 29723-31624 bp Ori: ONP23986.1 Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 2975 6-30362 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: domain Description: Dcm Location: 31361-315 20 bp Feature: gene Location: 31683-32681 bp Ori: ONP23874.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: gene Location: 33025-33381 bp Ori: ONP23875.1 Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: domain Description: Avd_like Location: 3305 2-3335 8 bp Feature: gene Location: 33396-33860 bp Ori: ONP23876.1 Feature: domain Description: DUF1566 Location: 33657-33837 bp Feature: domain Description: DUF15 66 Location: 3365 7-33837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)