myRT

myRT report for GCA_001991255.1_ASM199125v1

Download annotations/find similar RTs

Seq: MUQL01000101.1 Burkholderia cenocepacia strain VC3929 VC3929_contig-11, whole genome shotgun sequence (264541 bp)
Overview 1 RT 1: 134834-138583 bp Neighborhood of RT #1 [134834, 138654] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 134834-135589 bp Feature: domain Description: his_ut_repres Location: 134912-135584 bp Feature: domain Description: his_ut_repres Location: 1 3491 2-1 35584 bp Feature: gene Location: 135824-136396 bp Feature: domain Description: FIN Location: 136010-136361 bp Feature: domain Description: FIN Location: 1 3601 0-1 36361 bp Feature: gene Location: 136650-137999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 137115-137751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 371 1 5-1 37751 bp Feature: gene Location: 137972-138178 bp Feature: gene Location: 138325-138654 bp Feature: domain Description: Histone_HNS Location: 138346-138583 bp Feature: domain Description: Histone_HNS Location: 1 38346-1 38583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUQL01000012.1 Burkholderia cenocepacia strain VC3929 VC3929_contig-4000001, whole genome shotgun sequence (124165 bp)
Overview 1 RT 1: 3720-9405 bp Neighborhood of RT #1 [3720, 9449] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3720-4232 bp Feature: domain Description: SnoaL_4 Location: 3741-4110 bp Feature: domain Description: SnoaL_4 Location: 3741-4110 bp Feature: gene Location: 4285-5001 bp Feature: domain Description: EthD Location: 4351-4537 bp Feature: domain Description: EthD Location: 4351-4537 bp Feature: domain Description: EthD Location: 4675-4948 bp Feature: domain Description: EthD Location: 4675-4948 bp Feature: gene Location: 5098-6339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5290-5908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 90-5908 bp Feature: domain Description: GIIM Note: maturase Location: 5959-6163 bp Feature: domain Description: GIIM Note: maturase Location: 5959-6163 bp Feature: gene Location: 6938-8521 bp Feature: domain Description: PRK06498 Location: 6941-8519 bp Feature: domain Description: PRK06498 Location: 6941-8519 bp Feature: gene Location: 8928-9449 bp Feature: domain Description: YeaK Location: 8949-9405 bp Feature: domain Description: YeaK Location: 8949-9405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUQL01000084.1 Burkholderia cenocepacia strain VC3929 VC3929_contig-1000009, whole genome shotgun sequence (61779 bp)
Overview 1 RT 1: 56780-61714 bp Neighborhood of RT #1 [56780, 61770] MFS_MMR_MDR_like AcrR RVT-GII GIIM COG3547 Feature: gene Location: 56780-58300 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56822-58235 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56822-5823 5 bp Feature: gene Location: 58446-59084 bp Feature: domain Description: AcrR Location: 58509-59070 bp Feature: domain Description: AcrR Location: 58509-59070 bp Feature: gene Location: 59174-60571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59507-60125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59507-60125 bp Feature: domain Description: GIIM Note: maturase Location: 60176-60386 bp Feature: domain Description: GIIM Note: maturase Location: 60176-603 86 bp Feature: gene Location: 60736-61770 bp Feature: domain Description: COG3547 Location: 60751-61714 bp Feature: domain Description: COG3 547 Location: 60751-61714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), AcrR (COG1309), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )