myRT

myRT report for GCA_001991275.1_ASM199127v1

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Seq: MUPX01000035.1 Burkholderia cenocepacia strain VC5280 VC5280_contig-5000003, whole genome shotgun sequence (42736 bp)
Overview 1 RT 1: 2171-6779 bp Neighborhood of RT #1 [2171, 6787] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 2171-2365 bp Feature: gene Location: 2745-3779 bp Ori: ONO55459.1 Feature: domain Description: COG3547 Location: 2760-3723 bp Feature: domain Description: COG3547 Location: 2760-3723 bp Feature: gene Location: 3950-5317 bp Ori: ONO55460.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4283-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4283-4898 bp Feature: domain Description: GIIM Note: maturase Location: 4958-5159 bp Feature: domain Description: GIIM Note: maturase Location: 4958-51 59 bp Feature: gene Location: 5425-6312 bp Ori: ONO55461.1 Feature: domain Description: RsmI Location: 5473-6286 bp Feature: domain Description: RsmI Location: 5473-6286 bp Feature: gene Location: 6311-6787 bp Ori: ONO55462.1 Feature: domain Description: PRK14673 Location: 6362-6779 bp Feature: domain Description: PRK1 4673 Location: 6362-6779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUPX01000118.1 Burkholderia cenocepacia strain VC5280 VC5280_contig-1000014, whole genome shotgun sequence (141243 bp)
Overview 1 RT 1: 11875-15624 bp Neighborhood of RT #1 [11875, 15695] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11875-12630 bp Ori: ONO41779.1 Feature: domain Description: his_ut_repres Location: 11953-12625 bp Feature: domain Description: his_ut_repres Location: 11953-12 62 5 bp Feature: gene Location: 12865-13437 bp Ori: ONO41780.1 Feature: domain Description: FIN Location: 13051-13402 bp Feature: domain Description: FIN Location: 13051-13402 bp Feature: gene Location: 13691-15040 bp Ori: ONO41781.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14156-14792 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14156-14792 bp Feature: gene Location: 15013-15219 bp Feature: gene Location: 15366-15695 bp Ori: ONO41783.1 Feature: domain Description: Histone_HNS Location: 15387-15624 bp Feature: domain Description: Histone_HNS Location: 15387-1562 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUPX01000104.1 Burkholderia cenocepacia strain VC5280 VC5280_contig-12, whole genome shotgun sequence (68936 bp)
Overview 1 RT 1: 65503-68929 bp Neighborhood of RT #1 [65503, 68936] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 65503-66018 bp Ori: ONO43950.1 Feature: domain Description: PRK12511 Location: 65515-66010 bp Feature: domain Description: PRK12511 Location: 65515-66010 bp Feature: gene Location: 66046-66405 bp Ori: ONO43951.1 Feature: domain Description: COG4315 Location: 66067-66403 bp Feature: domain Description: COG43 15 Location: 66067-66403 bp Feature: gene Location: 66686-68053 bp Ori: ONO43952.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67019-67634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67019-6763 4 bp Feature: domain Description: GIIM Note: maturase Location: 67694-67895 bp Feature: domain Description: GIIM Note: maturase Location: 67694-67895 bp Feature: gene Location: 68224-68936 bp Ori: ONO43953.1 Feature: domain Description: COG3547 Location: 68239-68929 bp Feature: domain Description: COG3 547 Location: 6823 9-68929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUPX01000124.1 Burkholderia cenocepacia strain VC5280 VC5280_contig-15, whole genome shotgun sequence (95564 bp)
Overview 1 RT 1: 90170-95499 bp Neighborhood of RT #1 [90170, 95564] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 90170-90859 bp Feature: gene Location: 91111-93126 bp Ori: ONO41054.1 Feature: domain Description: HATPase_c_3 Location: 91180-91504 bp Feature: domain Description: HATPase_c_3 Location: 91180-91504 bp Feature: gene Location: 93654-95108 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93663-94137 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93663-94 137 bp Feature: gene Location: 95157-95564 bp Ori: ONO41062.1 Feature: domain Description: rve_3 Location: 95301-95499 bp Feature: domain Description: rve_3 Location: 95301-954 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUPX01000028.1 Burkholderia cenocepacia strain VC5280 VC5280_contig-11000002, whole genome shotgun sequence (232182 bp)
Overview 1 RT 1: 198323-202735 bp Neighborhood of RT #1 [198323, 202735] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 198323-198787 bp Ori: ONO56849.1 Feature: domain Description: DUF1566 Location: 198584-198764 bp Feature: domain Description: DUF15 66 Location: 1985 84-198764 bp Feature: gene Location: 198802-199158 bp Ori: ONO56850.1 Feature: domain Description: Avd_like Location: 198829-199135 bp Feature: domain Description: Avd_like Location: 198829-199135 bp Feature: gene Location: 199502-200500 bp Ori: ONO56851.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 199595-200282 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1995 95 -200282 bp Feature: gene Location: 200559-202460 bp Ori: ONO56852.1 Feature: domain Description: Dcm Location: 200592-201198 bp Feature: domain Description: Dcm Location: 2005 92-201198 bp Feature: domain Description: Dcm Location: 202197-202356 bp Feature: domain Description: Dcm Location: 202197-20235 6 bp Feature: gene Location: 202475-202735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUPX01000083.1 Burkholderia cenocepacia strain VC5280 VC5280_contig-4000009, whole genome shotgun sequence (45039 bp)
Overview 1 RT 1: 3077-10097 bp Neighborhood of RT #1 [3077, 10097] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 3077-3742 bp Feature: domain Description: GIIM Note: maturase Location: 3080-3305 bp Feature: domain Description: GIIM Note: maturase Location: 3080-3305 bp Feature: domain Description: HNHc Note: nucleases Location: 3539-3695 bp Feature: domain Description: HNHc Note: nucleases Location: 3539-36 95 bp Feature: gene Location: 3888-6803 bp Ori: ONO47736.1 Feature: domain Description: DUF4158 Location: 3927-4392 bp Feature: domain Description: DUF4158 Location: 3927-4392 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5580-6726 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5580-6 726 bp Feature: gene Location: 6934-8004 bp Feature: domain Description: RVT_N Location: 6991-7228 bp Feature: domain Description: RVT_N Location: 6 991-7228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7279-7930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7279-7930 bp Feature: gene Location: 8600-9655 bp Ori: ONO47737.1 Feature: domain Description: DEXHc_Snf Location: 8819-9074 bp Feature: domain Description: DEXHc_Snf Location: 8819-9074 bp Feature: gene Location: 9792-10097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)