myRT

myRT report for GCA_001991295.1_ASM199129v1

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Seq: MUPW01000098.1 Burkholderia cenocepacia strain VC5018 VC5018_contig-2000013, whole genome shotgun sequence (41133 bp)
Overview 1 RT 1: 37369-41068 bp Neighborhood of RT #1 [37369, 41124] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 37369-37884 bp Ori: ONO00695.1 Feature: domain Description: PRK12511 Location: 37381-37876 bp Feature: domain Description: PRK1 251 1 Location: 37381 -37876 bp Feature: gene Location: 37912-38271 bp Ori: ONO00696.1 Feature: domain Description: COG4315 Location: 37933-38269 bp Feature: domain Description: COG431 5 Location: 37933-38269 bp Feature: gene Location: 38552-39919 bp Ori: ONO00697.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38885-39500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38885-39500 bp Feature: domain Description: GIIM Note: maturase Location: 39560-39761 bp Feature: domain Description: GIIM Note: maturase Location: 39560-39761 bp Feature: gene Location: 40090-41124 bp Ori: ONO00698.1 Feature: domain Description: COG3547 Location: 40105-41068 bp Feature: domain Description: COG3547 Location: 401 05-41 068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUPW01000009.1 Burkholderia cenocepacia strain VC5018 VC5018_contig-1, whole genome shotgun sequence (232153 bp)
Overview 1 RT 1: 198299-202711 bp Neighborhood of RT #1 [198299, 202711] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 198299-198763 bp Ori: ONO14970.1 Feature: domain Description: DUF1566 Location: 198560-198740 bp Feature: domain Description: DUF1566 Location: 198560-198740 bp Feature: gene Location: 198778-199134 bp Ori: ONO14971.1 Feature: domain Description: Avd_like Location: 198805-199111 bp Feature: domain Description: Avd_like Location: 198805-199111 bp Feature: gene Location: 199478-200476 bp Ori: ONO14972.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 199571-200258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 199571-2 002 58 bp Feature: gene Location: 200535-202436 bp Ori: ONO14973.1 Feature: domain Description: Dcm Location: 200568-201174 bp Feature: domain Description: Dcm Location: 2 00568-2 01174 bp Feature: domain Description: Dcm Location: 202173-202332 bp Feature: domain Description: Dcm Location: 2 02 173-2 02 332 bp Feature: gene Location: 202451-202711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUPW01000068.1 Burkholderia cenocepacia strain VC5018 VC5018_contig-3000008, whole genome shotgun sequence (46816 bp)
Overview 1 RT 1: 41422-46751 bp Neighborhood of RT #1 [41422, 46816] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 41422-42111 bp Feature: gene Location: 42363-44378 bp Ori: ONO05407.1 Feature: domain Description: HATPase_c_3 Location: 42432-42756 bp Feature: domain Description: HATPase_c_3 Location: 4243 2-42756 bp Feature: gene Location: 44906-46360 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44915-45389 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44915-453 89 bp Feature: gene Location: 46409-46816 bp Ori: ONO05410.1 Feature: domain Description: rve_3 Location: 46553-46751 bp Feature: domain Description: rve_3 Location: 46553 -46751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUPW01000049.1 Burkholderia cenocepacia strain VC5018 VC5018_contig-12000005, whole genome shotgun sequence (42919 bp)
Overview 1 RT 1: 2354-6962 bp Neighborhood of RT #1 [2354, 6970] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 2354-2548 bp Feature: gene Location: 2928-3962 bp Ori: ONO08821.1 Feature: domain Description: COG3547 Location: 2943-3906 bp Feature: domain Description: COG354 7 Location: 294 3-3906 bp Feature: gene Location: 4133-5500 bp Ori: ONO08822.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4466-5081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 66-5081 bp Feature: domain Description: GIIM Note: maturase Location: 5141-5342 bp Feature: domain Description: GIIM Note: maturase Location: 514 1-534 2 bp Feature: gene Location: 5608-6495 bp Ori: ONO08823.1 Feature: domain Description: RsmI Location: 5656-6469 bp Feature: domain Description: RsmI Location: 5656-64 69 bp Feature: gene Location: 6494-6970 bp Ori: ONO08824.1 Feature: domain Description: PRK14673 Location: 6545-6962 bp Feature: domain Description: PRK14 673 Location: 654 5-6962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUPW01000067.1 Burkholderia cenocepacia strain VC5018 VC5018_contig-2000008, whole genome shotgun sequence (46058 bp)
Overview 1 RT 1: 3445-10465 bp Neighborhood of RT #1 [3445, 10465] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 3445-4110 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: gene Location: 4256-7171 bp Ori: ONO05449.1 Feature: domain Description: DUF4158 Location: 4295-4760 bp Feature: domain Description: DUF415 8 Location: 4295 -4760 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5 948-7094 bp Feature: gene Location: 7302-8372 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: domain Description: RVT_N Location: 735 9-75 96 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: gene Location: 8968-10023 bp Ori: ONO05450.1 Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: gene Location: 10160-10465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUPW01000065.1 Burkholderia cenocepacia strain VC5018 VC5018_contig-8, whole genome shotgun sequence (141329 bp)
Overview 1 RT 1: 125549-129364 bp Neighborhood of RT #1 [125549, 129369] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125549-125878 bp Ori: ONO05992.1 Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: gene Location: 126025-126231 bp Feature: gene Location: 126204-127553 bp Ori: ONO05994.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126 6 6 9-127305 bp Feature: gene Location: 127807-128379 bp Ori: ONO05995.1 Feature: domain Description: FIN Location: 127993-128344 bp Feature: domain Description: FIN Location: 127993-128344 bp Feature: gene Location: 128614-129369 bp Ori: ONO05996.1 Feature: domain Description: his_ut_repres Location: 128692-129364 bp Feature: domain Description: his_ut_repres Location: 1286 92-12936 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)