myRT

myRT report for GCA_001991315.1_ASM199131v1

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Seq: MUQS01000112.1 Burkholderia cenocepacia strain VC8556 VC8556_contig-4000010, whole genome shotgun sequence (19183 bp)
Overview 1 RT 1: 3730-9415 bp Neighborhood of RT #1 [3730, 9459] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3730-4242 bp Feature: domain Description: SnoaL_4 Location: 3751-4120 bp Feature: domain Description: SnoaL_4 Location: 3751 -41 20 bp Feature: gene Location: 4295-5011 bp Feature: domain Description: EthD Location: 4361-4547 bp Feature: domain Description: EthD Location: 4361 -4547 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: gene Location: 5108-6349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-591 8 bp Feature: domain Description: GIIM Note: maturase Location: 5969-6173 bp Feature: domain Description: GIIM Note: maturase Location: 5969-61 73 bp Feature: gene Location: 6948-8531 bp Feature: domain Description: PRK06498 Location: 6951-8529 bp Feature: domain Description: PRK06498 Location: 6951 -8529 bp Feature: gene Location: 8938-9459 bp Feature: domain Description: YeaK Location: 8959-9415 bp Feature: domain Description: YeaK Location: 8959-941 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUQS01000027.1 Burkholderia cenocepacia strain VC8556 VC8556_contig-13000001, whole genome shotgun sequence (61141 bp)
Overview 1 RT 1: 56142-61076 bp Neighborhood of RT #1 [56142, 61132] MFS_MMR_MDR_like AcrR RVT-GII GIIM COG3547 Feature: gene Location: 56142-57662 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56184-57597 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56184-57597 bp Feature: gene Location: 57808-58446 bp Feature: domain Description: AcrR Location: 57871-58432 bp Feature: domain Description: AcrR Location: 57871-58432 bp Feature: gene Location: 58536-59933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58869-59487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58869-59487 bp Feature: domain Description: GIIM Note: maturase Location: 59538-59748 bp Feature: domain Description: GIIM Note: maturase Location: 59538-59748 bp Feature: gene Location: 60098-61132 bp Feature: domain Description: COG3547 Location: 60113-61076 bp Feature: domain Description: COG3547 Location: 60113-61076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), AcrR (COG1309), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUQS01000122.1 Burkholderia cenocepacia strain VC8556 VC8556_contig-14000010, whole genome shotgun sequence (147756 bp)
Overview 1 RT 1: 17451-21200 bp Neighborhood of RT #1 [17451, 21271] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 17451-18206 bp Feature: domain Description: his_ut_repres Location: 17529-18201 bp Feature: domain Description: his_ut_repres Location: 17529-18201 bp Feature: gene Location: 18441-19013 bp Feature: domain Description: FIN Location: 18627-18978 bp Feature: domain Description: FIN Location: 18627-18978 bp Feature: gene Location: 19267-20616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19732-20368 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1973 2-203 68 bp Feature: gene Location: 20589-20795 bp Feature: gene Location: 20942-21271 bp Feature: domain Description: Histone_HNS Location: 20963-21200 bp Feature: domain Description: Histone_HNS Location: 20963 -21200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)