myRT

myRT report for GCA_001991375.1_ASM199137v1

Download annotations/find similar RTs

Seq: MUQY01000153.1 Burkholderia cenocepacia strain VC14815 VC14815_contig-8000008, whole genome shotgun sequence (19173 bp)
Overview 1 RT 1: 3720-9405 bp Neighborhood of RT #1 [3720, 9449] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3720-4232 bp Feature: domain Description: SnoaL_4 Location: 3741-4110 bp Feature: domain Description: SnoaL_4 Location: 3741 -41 1 0 bp Feature: gene Location: 4285-5001 bp Feature: domain Description: EthD Location: 4351-4537 bp Feature: domain Description: EthD Location: 4351 -4537 bp Feature: domain Description: EthD Location: 4675-4948 bp Feature: domain Description: EthD Location: 4675-4948 bp Feature: gene Location: 5098-6339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5290-5908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5290-5908 bp Feature: domain Description: GIIM Note: maturase Location: 5959-6163 bp Feature: domain Description: GIIM Note: maturase Location: 5959-61 63 bp Feature: gene Location: 6938-8521 bp Feature: domain Description: PRK06498 Location: 6941-8519 bp Feature: domain Description: PRK06498 Location: 6941 -851 9 bp Feature: gene Location: 8928-9449 bp Feature: domain Description: YeaK Location: 8949-9405 bp Feature: domain Description: YeaK Location: 8949-9405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUQY01000278.1 Burkholderia cenocepacia strain VC14815 VC14815_contig-3000015, whole genome shotgun sequence (61129 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 2 5-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542 -2 160 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 11-2 42 1 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2 759-332 0 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 352 2 -4935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MUQY01000144.1 Burkholderia cenocepacia strain VC14815 VC14815_contig-34000007, whole genome shotgun sequence (110923 bp)
Overview 1 RT 1: 12683-16432 bp Neighborhood of RT #1 [12683, 16503] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12683-13438 bp Feature: domain Description: his_ut_repres Location: 12761-13433 bp Feature: domain Description: his_ut_repres Location: 12761-13 43 3 bp Feature: gene Location: 13673-14245 bp Feature: domain Description: FIN Location: 13859-14210 bp Feature: domain Description: FIN Location: 13 859-14210 bp Feature: gene Location: 14499-15848 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14964-15600 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14964-15600 bp Feature: gene Location: 15821-16027 bp Feature: gene Location: 16174-16503 bp Feature: domain Description: Histone_HNS Location: 16195-16432 bp Feature: domain Description: Histone_HNS Location: 16195-1643 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)