myRT

myRT report for GCA_001991385.1_ASM199138v1

Download annotations/find similar RTs

Seq: MUQX01000111.1 Burkholderia cenocepacia strain VC14748 VC14748_contig-9, whole genome shotgun sequence (61131 bp)
Overview 1 RT 1: 56132-61066 bp Neighborhood of RT #1 [56132, 61122] MFS_MMR_MDR_like AcrR RVT-GII GIIM COG3547 Feature: gene Location: 56132-57652 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56174-57587 bp Feature: domain Description: MFS_MMR_MDR_like Location: 561 74-57587 bp Feature: gene Location: 57798-58436 bp Feature: domain Description: AcrR Location: 57861-58422 bp Feature: domain Description: AcrR Location: 57861 -58422 bp Feature: gene Location: 58526-59923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58859-59477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58859-59477 bp Feature: domain Description: GIIM Note: maturase Location: 59528-59738 bp Feature: domain Description: GIIM Note: maturase Location: 59528-59738 bp Feature: gene Location: 60088-61122 bp Feature: domain Description: COG3547 Location: 60103-61066 bp Feature: domain Description: COG3547 Location: 601 03-61 066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), AcrR (COG1309), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUQX01000002.1 Burkholderia cenocepacia strain VC14748 VC14748_contig-1000000, whole genome shotgun sequence (124028 bp)
Overview 1 RT 1: 114570-120177 bp Neighborhood of RT #1 [114570, 120299] YeaK PRK06498 RVT-GII GIIM EthD EthD SnoaL_4 Feature: gene Location: 114570-115091 bp Feature: domain Description: YeaK Location: 114591-115047 bp Feature: domain Description: YeaK Location: 114591-115047 bp Feature: gene Location: 115498-117081 bp Feature: domain Description: PRK06498 Location: 115501-117079 bp Feature: domain Description: PRK06498 Location: 115501-117079 bp Feature: gene Location: 117680-118921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117872-118490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117872 -118490 bp Feature: domain Description: GIIM Note: maturase Location: 118541-118745 bp Feature: domain Description: GIIM Note: maturase Location: 118541-118745 bp Feature: gene Location: 119018-119734 bp Feature: domain Description: EthD Location: 119084-119270 bp Feature: domain Description: EthD Location: 119084-1192 70 bp Feature: domain Description: EthD Location: 119408-119681 bp Feature: domain Description: EthD Location: 119408-119681 bp Feature: gene Location: 119787-120299 bp Feature: domain Description: SnoaL_4 Location: 119808-120177 bp Feature: domain Description: SnoaL_4 Location: 119808-12 0177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaK (cd04336), PRK06498 (isocitrate lyase; Provisional), RVT-GII, GIIM (pfam08388), EthD (pfam07110), SnoaL_4 (pfam13577)

Seq: MUQX01000179.1 Burkholderia cenocepacia strain VC14748 VC14748_contig-3000015, whole genome shotgun sequence (245861 bp)
Overview 1 RT 1: 116256-120005 bp Neighborhood of RT #1 [116256, 120076] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 116256-117011 bp Feature: domain Description: his_ut_repres Location: 116334-117006 bp Feature: domain Description: his_ut_repres Location: 1163 3 4-117006 bp Feature: gene Location: 117246-117818 bp Feature: domain Description: FIN Location: 117432-117783 bp Feature: domain Description: FIN Location: 11743 2-117783 bp Feature: gene Location: 118072-119421 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 118537-119173 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11853 7-119173 bp Feature: gene Location: 119394-119600 bp Feature: gene Location: 119747-120076 bp Feature: domain Description: Histone_HNS Location: 119768-120005 bp Feature: domain Description: Histone_HNS Location: 119768-120005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)