myRT

myRT report for GCA_001991435.1_ASM199143v1

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Seq: MUPV01000108.1 Burkholderia cenocepacia strain VC4462 VC4462_contig-10000009, whole genome shotgun sequence (153161 bp)
Overview 1 RT 1: 110668-117688 bp Neighborhood of RT #1 [110668, 117688] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 110668-111333 bp Feature: domain Description: GIIM Note: maturase Location: 110671-110896 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 0671 -1 1 0896 bp Feature: domain Description: HNHc Note: nucleases Location: 111130-111286 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 1 1 30-1 1 1 286 bp Feature: gene Location: 111479-114394 bp Ori: ONO30314.1 Feature: domain Description: DUF4158 Location: 111518-111983 bp Feature: domain Description: DUF41 58 Location: 1 1 1 51 8-1 1 1 983 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 113171-114317 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 1 31 71 -1 1 431 7 bp Feature: gene Location: 114525-115595 bp Feature: domain Description: RVT_N Location: 114582-114819 bp Feature: domain Description: RVT_N Location: 1 1 4582-1 1 481 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114870-115521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4870-1 1 5521 bp Feature: gene Location: 116191-117246 bp Ori: ONO30315.1 Feature: domain Description: DEXHc_Snf Location: 116410-116665 bp Feature: domain Description: DEXHc_Snf Location: 1 1 641 0-1 1 6665 bp Feature: gene Location: 117383-117688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUPV01000116.1 Burkholderia cenocepacia strain VC4462 VC4462_contig-7000010, whole genome shotgun sequence (114418 bp)
Overview 1 RT 1: 61600-65989 bp Neighborhood of RT #1 [61600, 66012] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 61600-61860 bp Feature: gene Location: 61875-63776 bp Ori: ONO28946.1 Feature: domain Description: Dcm Location: 61908-62514 bp Feature: domain Description: Dcm Location: 61908-62 514 bp Feature: domain Description: Dcm Location: 63513-63672 bp Feature: domain Description: Dcm Location: 63513-63672 bp Feature: gene Location: 63835-64833 bp Ori: ONO28947.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63928-64615 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6392 8-64615 bp Feature: gene Location: 65177-65533 bp Ori: ONO28948.1 Feature: domain Description: Avd_like Location: 65204-65510 bp Feature: domain Description: Avd_like Location: 652 04-65510 bp Feature: gene Location: 65548-66012 bp Ori: ONO28949.1 Feature: domain Description: DUF1566 Location: 65809-65989 bp Feature: domain Description: DUF1566 Location: 65809-65989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUPV01000032.1 Burkholderia cenocepacia strain VC4462 VC4462_contig-12000002, whole genome shotgun sequence (27024 bp)
Overview 1 RT 1: 1-3005 bp Neighborhood of RT #1 [1, 3005] RVT-GII GIIM COG3547 Feature: gene Location: 1-1226 bp Ori: ONO42168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-949 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1204 bp Feature: domain Description: GIIM Note: maturase Location: 1009-1204 bp Feature: gene Location: 1397-2431 bp Ori: ONO42148.1 Feature: domain Description: COG3547 Location: 1412-2375 bp Feature: domain Description: COG3 547 Location: 1412-23 75 bp Feature: gene Location: 2811-3005 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUPV01000022.1 Burkholderia cenocepacia strain VC4462 VC4462_contig-1000002, whole genome shotgun sequence (141690 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Ori: ONO43356.1 Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 124 00-13072 bp Feature: gene Location: 13312-13884 bp Ori: ONO43357.1 Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 134 98-1384 9 bp Feature: gene Location: 14138-15487 bp Ori: ONO43358.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 603-15239 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Ori: ONO43360.1 Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 15834 -16071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUPV01000041.1 Burkholderia cenocepacia strain VC4462 VC4462_contig-1000004, whole genome shotgun sequence (46829 bp)
Overview 1 RT 1: 1-5395 bp Neighborhood of RT #1 [1, 5395] rve_3 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-408 bp Ori: ONO40627.1 Feature: domain Description: rve_3 Location: 145-343 bp Feature: domain Description: rve_3 Location: 145 -343 bp Feature: gene Location: 457-1911 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 466-940 bp Feature: gene Location: 2439-4454 bp Ori: ONO40628.1 Feature: domain Description: HATPase_c_3 Location: 2508-2832 bp Feature: domain Description: HATPase_c_3 Location: 25 08-2832 bp Feature: gene Location: 4706-5395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5, HATPase_c_3 (pfam13589)