myRT

myRT report for GCA_001991455.1_ASM199145v1

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Seq: MUQH01000023.1 Burkholderia cenocepacia strain VC7945 VC7945_contig-8000002, whole genome shotgun sequence (221958 bp)
Overview 1 RT 1: 208883-215097 bp Neighborhood of RT #1 [208883, 215138] COG3547 RVT-GII GIIM RpiR PRK09054 Feature: gene Location: 208883-209077 bp Feature: gene Location: 209457-210491 bp Ori: ONO88554.1 Feature: domain Description: COG3547 Location: 209472-210435 bp Feature: domain Description: COG3547 Location: 209472-21 0435 bp Feature: gene Location: 210662-212029 bp Ori: ONO88555.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210995-211610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0995-21 1 61 0 bp Feature: domain Description: GIIM Note: maturase Location: 211670-211871 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 670-21 1 871 bp Feature: gene Location: 212139-212987 bp Ori: ONO88556.1 Feature: domain Description: RpiR Location: 212142-212964 bp Feature: domain Description: RpiR Location: 21 21 42-21 2964 bp Feature: gene Location: 213282-215138 bp Ori: ONO88557.1 Feature: domain Description: PRK09054 Location: 213294-215097 bp Feature: domain Description: PRK09054 Location: 21 3294-21 5097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RpiR (COG1737), PRK09054 (phosphogluconate dehydratase; Validated)

Seq: MUQH01000067.1 Burkholderia cenocepacia strain VC7945 VC7945_contig-8000007, whole genome shotgun sequence (249448 bp)
Overview 1 RT 1: 35950-40566 bp Neighborhood of RT #1 [35950, 40566] PRK14673 RsmI RVT-GII GIIM COG3547 Feature: gene Location: 35950-36426 bp Ori: ONO80753.1 Feature: domain Description: PRK14673 Location: 36001-36418 bp Feature: domain Description: PRK14673 Location: 36001-36418 bp Feature: gene Location: 36425-37312 bp Ori: ONO80754.1 Feature: domain Description: RsmI Location: 36473-37286 bp Feature: domain Description: RsmI Location: 36473-372 86 bp Feature: gene Location: 37420-38787 bp Ori: ONO80755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37753-38368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37753-38368 bp Feature: domain Description: GIIM Note: maturase Location: 38428-38629 bp Feature: domain Description: GIIM Note: maturase Location: 3842 8-3862 9 bp Feature: gene Location: 38958-39992 bp Ori: ONO80756.1 Feature: domain Description: COG3547 Location: 38973-39936 bp Feature: domain Description: COG3547 Location: 38973-39936 bp Feature: gene Location: 40372-40566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUQH01000093.1 Burkholderia cenocepacia strain VC7945 VC7945_contig-7000010, whole genome shotgun sequence (299757 bp)
Overview 1 RT 1: 257144-264164 bp Neighborhood of RT #1 [257144, 264164] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 257144-257809 bp Feature: domain Description: GIIM Note: maturase Location: 257147-257372 bp Feature: domain Description: GIIM Note: maturase Location: 257147-2573 72 bp Feature: domain Description: HNHc Note: nucleases Location: 257606-257762 bp Feature: domain Description: HNHc Note: nucleases Location: 257606-257762 bp Feature: gene Location: 257955-260870 bp Ori: ONO76418.1 Feature: domain Description: DUF4158 Location: 257994-258459 bp Feature: domain Description: DUF4158 Location: 257994-258459 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 259647-260793 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 259647-260793 bp Feature: gene Location: 261001-262071 bp Feature: domain Description: RVT_N Location: 261058-261295 bp Feature: domain Description: RVT_N Location: 261058-261295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261346-261997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613 46-261997 bp Feature: gene Location: 262667-263722 bp Ori: ONO76419.1 Feature: domain Description: DEXHc_Snf Location: 262886-263141 bp Feature: domain Description: DEXHc_Snf Location: 262886-263 141 bp Feature: gene Location: 263859-264164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUQH01000040.1 Burkholderia cenocepacia strain VC7945 VC7945_contig-7000004, whole genome shotgun sequence (190681 bp)
Overview 1 RT 1: 82179-86591 bp Neighborhood of RT #1 [82179, 86591] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 82179-82643 bp Ori: ONO85498.1 Feature: domain Description: DUF1566 Location: 82440-82620 bp Feature: domain Description: DUF1566 Location: 824 4 0-82620 bp Feature: gene Location: 82658-83014 bp Ori: ONO85499.1 Feature: domain Description: Avd_like Location: 82685-82991 bp Feature: domain Description: Avd_like Location: 82685-82991 bp Feature: gene Location: 83358-84356 bp Ori: ONO85500.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 83451-84138 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 834 51-84 138 bp Feature: gene Location: 84415-86316 bp Ori: ONO85501.1 Feature: domain Description: Dcm Location: 84448-85054 bp Feature: domain Description: Dcm Location: 84 4 4 8-85054 bp Feature: domain Description: Dcm Location: 86053-86212 bp Feature: domain Description: Dcm Location: 86053-86212 bp Feature: gene Location: 86331-86591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUQH01000003.1 Burkholderia cenocepacia strain VC7945 VC7945_contig-2000000, whole genome shotgun sequence (46869 bp)
Overview 1 RT 1: 41442-46837 bp Neighborhood of RT #1 [41442, 46869] HATPase_c_3 RVT-UG5 Tra5 Feature: gene Location: 41442-42131 bp Feature: gene Location: 42383-44398 bp Ori: ONO91357.1 Feature: domain Description: HATPase_c_3 Location: 42452-42776 bp Feature: domain Description: HATPase_c_3 Location: 4245 2-42776 bp Feature: gene Location: 44926-46380 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44935-45409 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44935 -45 409 bp Feature: gene Location: 46429-46869 bp Ori: ONO91358.1 Feature: domain Description: Tra5 Location: 46432-46837 bp Feature: domain Description: Tra5 Location: 46432-46837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, Tra5 (COG2801)

Seq: MUQH01000130.1 Burkholderia cenocepacia strain VC7945 VC7945_contig-11000014, whole genome shotgun sequence (278303 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Ori: ONO69620.1 Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: gene Location: 13312-13884 bp Ori: ONO69621.1 Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 13498-13849 bp Feature: gene Location: 14138-15487 bp Ori: ONO69622.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 146 03-15239 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Ori: ONO69624.1 Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 15834-16 071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)