myRT

myRT report for GCA_001991475.1_ASM199147v1

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Seq: MUQI01000027.1 Burkholderia cenocepacia strain VC8379 VC8379_contig-4000003, whole genome shotgun sequence (231815 bp)
Overview 1 RT 1: 29121-33510 bp Neighborhood of RT #1 [29121, 33533] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29121-29381 bp Feature: gene Location: 29396-31297 bp Ori: ONO98091.1 Feature: domain Description: Dcm Location: 29429-30035 bp Feature: domain Description: Dcm Location: 29429-30035 bp Feature: domain Description: Dcm Location: 31034-31193 bp Feature: domain Description: Dcm Location: 31 034-31 1 93 bp Feature: gene Location: 31356-32354 bp Ori: ONO97924.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31449-32136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 449-321 36 bp Feature: gene Location: 32698-33054 bp Ori: ONO97925.1 Feature: domain Description: Avd_like Location: 32725-33031 bp Feature: domain Description: Avd_like Location: 32725-33031 bp Feature: gene Location: 33069-33533 bp Ori: ONO97926.1 Feature: domain Description: DUF1566 Location: 33330-33510 bp Feature: domain Description: DUF1 566 Location: 33330-3351 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUQI01000039.1 Burkholderia cenocepacia strain VC8379 VC8379_contig-7000005, whole genome shotgun sequence (209318 bp)
Overview 1 RT 1: 168752-173360 bp Neighborhood of RT #1 [168752, 173368] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 168752-168946 bp Feature: gene Location: 169326-170360 bp Ori: ONO96260.1 Feature: domain Description: COG3547 Location: 169341-170304 bp Feature: domain Description: COG3547 Location: 169341-170304 bp Feature: gene Location: 170531-171898 bp Ori: ONO96261.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170864-171479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170864-171479 bp Feature: domain Description: GIIM Note: maturase Location: 171539-171740 bp Feature: domain Description: GIIM Note: maturase Location: 171539-171740 bp Feature: gene Location: 172006-172893 bp Ori: ONO96262.1 Feature: domain Description: RsmI Location: 172054-172867 bp Feature: domain Description: RsmI Location: 172 054-172 867 bp Feature: gene Location: 172892-173368 bp Ori: ONO96263.1 Feature: domain Description: PRK14673 Location: 172943-173360 bp Feature: domain Description: PRK14673 Location: 172 943-173360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUQI01000072.1 Burkholderia cenocepacia strain VC8379 VC8379_contig-1000010, whole genome shotgun sequence (45429 bp)
Overview 1 RT 1: 34965-41938 bp Neighborhood of RT #1 [34965, 41985] DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 34965-35270 bp Feature: gene Location: 35407-36462 bp Ori: ONO90966.1 Feature: domain Description: DEXHc_Snf Location: 35626-35881 bp Feature: domain Description: DEXHc_Snf Location: 3 5626-3 5881 bp Feature: gene Location: 37058-38128 bp Feature: domain Description: RVT_N Location: 37115-37352 bp Feature: domain Description: RVT_N Location: 3 7115-3 73 52 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37403-38054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7403 -3 8054 bp Feature: gene Location: 38259-41174 bp Ori: ONO90967.1 Feature: domain Description: DUF4158 Location: 38298-38763 bp Feature: domain Description: DUF4158 Location: 3 8298-3 8763 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 39951-41097 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 3 9951-41097 bp Feature: gene Location: 41320-41985 bp Feature: domain Description: GIIM Note: maturase Location: 41323-41548 bp Feature: domain Description: GIIM Note: maturase Location: 413 23 -41548 bp Feature: domain Description: HNHc Note: nucleases Location: 41782-41938 bp Feature: domain Description: HNHc Note: nucleases Location: 41782-4193 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUQI01000003.1 Burkholderia cenocepacia strain VC8379 VC8379_contig-2000000, whole genome shotgun sequence (46841 bp)
Overview 1 RT 1: 41447-46776 bp Neighborhood of RT #1 [41447, 46841] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 41447-42136 bp Feature: gene Location: 42388-44403 bp Ori: ONP03031.1 Feature: domain Description: HATPase_c_3 Location: 42457-42781 bp Feature: domain Description: HATPase_c_3 Location: 4 24 57-4 2781 bp Feature: gene Location: 44931-46385 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44940-45414 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 4 94 0-4 54 14 bp Feature: gene Location: 46434-46841 bp Ori: ONP03035.1 Feature: domain Description: rve_3 Location: 46578-46776 bp Feature: domain Description: rve_3 Location: 4 6578-4 6776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUQI01000080.1 Burkholderia cenocepacia strain VC8379 VC8379_contig-11, whole genome shotgun sequence (141690 bp)
Overview 1 RT 1: 125549-129364 bp Neighborhood of RT #1 [125549, 129369] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125549-125878 bp Ori: ONO89684.1 Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: domain Description: Histone_HNS Location: 125 5 70-125 807 bp Feature: gene Location: 126025-126231 bp Feature: gene Location: 126204-127553 bp Ori: ONO89686.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: gene Location: 127807-128379 bp Ori: ONO89687.1 Feature: domain Description: FIN Location: 127993-128344 bp Feature: domain Description: FIN Location: 127993-128344 bp Feature: gene Location: 128614-129369 bp Ori: ONO89688.1 Feature: domain Description: his_ut_repres Location: 128692-129364 bp Feature: domain Description: his_ut_repres Location: 128692-129364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQI01000058.1 Burkholderia cenocepacia strain VC8379 VC8379_contig-1000008, whole genome shotgun sequence (39971 bp)
Overview 1 RT 1: 55-2597 bp Neighborhood of RT #1 [55, 2605] RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 55-1422 bp Ori: ONO92540.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1003 bp Feature: domain Description: GIIM Note: maturase Location: 1063-1264 bp Feature: domain Description: GIIM Note: maturase Location: 106 3-126 4 bp Feature: gene Location: 1703-2062 bp Ori: ONO92541.1 Feature: domain Description: COG4315 Location: 1724-2060 bp Feature: domain Description: COG4315 Location: 1724-206 0 bp Feature: gene Location: 2090-2605 bp Ori: ONO92542.1 Feature: domain Description: PRK12511 Location: 2102-2597 bp Feature: domain Description: PRK12511 Location: 2102-2597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)