myRT

myRT report for GCA_001991495.1_ASM199149v1

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Seq: MUQR01000134.1 Burkholderia cenocepacia strain VC8057 VC8057_contig-1000011, whole genome shotgun sequence (147299 bp)
Overview 1 RT 1: 139323-143072 bp Neighborhood of RT #1 [139323, 143143] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 139323-140078 bp Feature: domain Description: his_ut_repres Location: 139401-140073 bp Feature: domain Description: his_ut_repres Location: 1 39401 -1 40073 bp Feature: gene Location: 140313-140885 bp Feature: domain Description: FIN Location: 140499-140850 bp Feature: domain Description: FIN Location: 1 40499-1 40850 bp Feature: gene Location: 141139-142488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 141604-142240 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 41 604-1 42240 bp Feature: gene Location: 142461-142667 bp Feature: gene Location: 142814-143143 bp Feature: domain Description: Histone_HNS Location: 142835-143072 bp Feature: domain Description: Histone_HNS Location: 1 42835-1 43072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUQR01000011.1 Burkholderia cenocepacia strain VC8057 VC8057_contig-2000001, whole genome shotgun sequence (124485 bp)
Overview 1 RT 1: 3694-9379 bp Neighborhood of RT #1 [3694, 9423] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3694-4206 bp Feature: domain Description: SnoaL_4 Location: 3715-4084 bp Feature: domain Description: SnoaL_4 Location: 3715-4084 bp Feature: gene Location: 4259-4975 bp Feature: domain Description: EthD Location: 4325-4511 bp Feature: domain Description: EthD Location: 432 5-4511 bp Feature: domain Description: EthD Location: 4649-4922 bp Feature: domain Description: EthD Location: 4649-492 2 bp Feature: gene Location: 5072-6313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5264-5882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 64-5882 bp Feature: domain Description: GIIM Note: maturase Location: 5933-6137 bp Feature: domain Description: GIIM Note: maturase Location: 5933-6137 bp Feature: gene Location: 6912-8495 bp Feature: domain Description: PRK06498 Location: 6915-8493 bp Feature: domain Description: PRK06498 Location: 6915-8493 bp Feature: gene Location: 8902-9423 bp Feature: domain Description: YeaK Location: 8923-9379 bp Feature: domain Description: YeaK Location: 892 3-9379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUQR01000014.1 Burkholderia cenocepacia strain VC8057 VC8057_contig-5000001, whole genome shotgun sequence (61766 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3 547 Location: 25-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2759-3 3 20 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3 522-493 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)