myRT

myRT report for GCA_001991515.1_ASM199151v1

Download annotations/find similar RTs

Seq: MUQO01000128.1 Burkholderia cenocepacia strain VC6904 VC6904_contig-1000011, whole genome shotgun sequence (268395 bp)
Overview 1 RT 1: 125870-129685 bp Neighborhood of RT #1 [125870, 129690] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125870-126199 bp Feature: domain Description: Histone_HNS Location: 125891-126128 bp Feature: domain Description: Histone_HNS Location: 1 25891 -1 261 28 bp Feature: gene Location: 126346-126552 bp Feature: gene Location: 126525-127874 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126990-127626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 26990-1 27626 bp Feature: gene Location: 128128-128700 bp Feature: domain Description: FIN Location: 128314-128665 bp Feature: domain Description: FIN Location: 1 2831 4-1 28665 bp Feature: gene Location: 128935-129690 bp Feature: domain Description: his_ut_repres Location: 129013-129685 bp Feature: domain Description: his_ut_repres Location: 1 2901 3-1 29685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQO01000011.1 Burkholderia cenocepacia strain VC6904 VC6904_contig-2000001, whole genome shotgun sequence (61780 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 2 5-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542 -2 160 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 11-2 42 1 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2 759-332 0 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 352 2 -4935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MUQO01000082.1 Burkholderia cenocepacia strain VC6904 VC6904_contig-3000007, whole genome shotgun sequence (19433 bp)
Overview 1 RT 1: 3710-9395 bp Neighborhood of RT #1 [3710, 9439] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3710-4222 bp Feature: domain Description: SnoaL_4 Location: 3731-4100 bp Feature: domain Description: SnoaL_4 Location: 3 73 1-4100 bp Feature: gene Location: 4275-4991 bp Feature: domain Description: EthD Location: 4341-4527 bp Feature: domain Description: EthD Location: 43 41-4527 bp Feature: domain Description: EthD Location: 4665-4938 bp Feature: domain Description: EthD Location: 4665-493 8 bp Feature: gene Location: 5088-6329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5280-5898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5280-5898 bp Feature: domain Description: GIIM Note: maturase Location: 5949-6153 bp Feature: domain Description: GIIM Note: maturase Location: 5949-6153 bp Feature: gene Location: 6928-8511 bp Feature: domain Description: PRK06498 Location: 6931-8509 bp Feature: domain Description: PRK06498 Location: 693 1-8509 bp Feature: gene Location: 8918-9439 bp Feature: domain Description: YeaK Location: 8939-9395 bp Feature: domain Description: YeaK Location: 893 9-93 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)