myRT

myRT report for GCA_001991535.1_ASM199153v1

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Seq: MUQP01000018.1 Burkholderia cenocepacia strain VC6903 VC6903_contig-4000001, whole genome shotgun sequence (61116 bp)
Overview 1 RT 1: 56117-61051 bp Neighborhood of RT #1 [56117, 61107] MFS_MMR_MDR_like AcrR RVT-GII GIIM COG3547 Feature: gene Location: 56117-57637 bp Feature: domain Description: MFS_MMR_MDR_like Location: 56159-57572 bp Feature: domain Description: MFS_MMR_MDR_like Location: 561 59-57572 bp Feature: gene Location: 57783-58421 bp Feature: domain Description: AcrR Location: 57846-58407 bp Feature: domain Description: AcrR Location: 57846-58407 bp Feature: gene Location: 58511-59908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58844-59462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58844-59462 bp Feature: domain Description: GIIM Note: maturase Location: 59513-59723 bp Feature: domain Description: GIIM Note: maturase Location: 5951 3-59723 bp Feature: gene Location: 60073-61107 bp Feature: domain Description: COG3547 Location: 60088-61051 bp Feature: domain Description: COG3547 Location: 60088-61 051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MMR_MDR_like (cd17504), AcrR (COG1309), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUQP01000063.1 Burkholderia cenocepacia strain VC6903 VC6903_contig-5, whole genome shotgun sequence (283775 bp)
Overview 1 RT 1: 126462-130277 bp Neighborhood of RT #1 [126462, 130282] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 126462-126791 bp Feature: domain Description: Histone_HNS Location: 126483-126720 bp Feature: domain Description: Histone_HNS Location: 12 6483-12 672 0 bp Feature: gene Location: 126938-127144 bp Feature: gene Location: 127117-128466 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127582-128218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 7582 -12 82 18 bp Feature: gene Location: 128720-129292 bp Feature: domain Description: FIN Location: 128906-129257 bp Feature: domain Description: FIN Location: 12 8906-12 92 57 bp Feature: gene Location: 129527-130282 bp Feature: domain Description: his_ut_repres Location: 129605-130277 bp Feature: domain Description: his_ut_repres Location: 12 9605-1302 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQP01000119.1 Burkholderia cenocepacia strain VC6903 VC6903_contig-4000010, whole genome shotgun sequence (19201 bp)
Overview 1 RT 1: 3730-9415 bp Neighborhood of RT #1 [3730, 9459] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3730-4242 bp Feature: domain Description: SnoaL_4 Location: 3751-4120 bp Feature: domain Description: SnoaL_4 Location: 3 751-4120 bp Feature: gene Location: 4295-5011 bp Feature: domain Description: EthD Location: 4361-4547 bp Feature: domain Description: EthD Location: 43 61-4547 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: gene Location: 5108-6349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 00-5918 bp Feature: domain Description: GIIM Note: maturase Location: 5969-6173 bp Feature: domain Description: GIIM Note: maturase Location: 5969-6173 bp Feature: gene Location: 6948-8531 bp Feature: domain Description: PRK06498 Location: 6951-8529 bp Feature: domain Description: PRK06498 Location: 6951-8529 bp Feature: gene Location: 8938-9459 bp Feature: domain Description: YeaK Location: 8959-9415 bp Feature: domain Description: YeaK Location: 8959-9415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)