myRT

myRT report for GCA_001991555.1_ASM199155v1

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Seq: MUQQ01000014.1 Burkholderia cenocepacia strain VC7603 VC7603_contig-3000001, whole genome shotgun sequence (61040 bp)
Overview 1 RT 1: 1-4844 bp Neighborhood of RT #1 [1, 4909] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 1-953 bp Feature: domain Description: COG3547 Location: 16-949 bp Feature: domain Description: COG3547 Location: 1 6-949 bp Feature: gene Location: 1118-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 451 -2069 bp Feature: domain Description: GIIM Note: maturase Location: 2120-2330 bp Feature: domain Description: GIIM Note: maturase Location: 21 20-2330 bp Feature: gene Location: 2605-3243 bp Feature: domain Description: AcrR Location: 2668-3229 bp Feature: domain Description: AcrR Location: 2668-3229 bp Feature: gene Location: 3389-4909 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3431-4844 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3431 -4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MUQQ01000082.1 Burkholderia cenocepacia strain VC7603 VC7603_contig-12000007, whole genome shotgun sequence (283201 bp)
Overview 1 RT 1: 125888-129703 bp Neighborhood of RT #1 [125888, 129708] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125888-126217 bp Feature: domain Description: Histone_HNS Location: 125909-126146 bp Feature: domain Description: Histone_HNS Location: 12 5909-12 6146 bp Feature: gene Location: 126364-126570 bp Feature: gene Location: 126543-127892 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127008-127644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 7008-12 7644 bp Feature: gene Location: 128146-128718 bp Feature: domain Description: FIN Location: 128332-128683 bp Feature: domain Description: FIN Location: 12 8332 -12 8683 bp Feature: gene Location: 128953-129708 bp Feature: domain Description: his_ut_repres Location: 129031-129703 bp Feature: domain Description: his_ut_repres Location: 12 9031-12 9703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQQ01000090.1 Burkholderia cenocepacia strain VC7603 VC7603_contig-9, whole genome shotgun sequence (123849 bp)
Overview 1 RT 1: 114391-119998 bp Neighborhood of RT #1 [114391, 120120] YeaK PRK06498 RVT-GII GIIM EthD EthD SnoaL_4 Feature: gene Location: 114391-114912 bp Feature: domain Description: YeaK Location: 114412-114868 bp Feature: domain Description: YeaK Location: 114412-114868 bp Feature: gene Location: 115319-116902 bp Feature: domain Description: PRK06498 Location: 115322-116900 bp Feature: domain Description: PRK06498 Location: 1153 22-116900 bp Feature: gene Location: 117501-118742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117693-118311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117693 -1183 11 bp Feature: domain Description: GIIM Note: maturase Location: 118362-118566 bp Feature: domain Description: GIIM Note: maturase Location: 1183 62-118566 bp Feature: gene Location: 118839-119555 bp Feature: domain Description: EthD Location: 118905-119091 bp Feature: domain Description: EthD Location: 118905-119091 bp Feature: domain Description: EthD Location: 119229-119502 bp Feature: domain Description: EthD Location: 119229-119502 bp Feature: gene Location: 119608-120120 bp Feature: domain Description: SnoaL_4 Location: 119629-119998 bp Feature: domain Description: SnoaL_4 Location: 119629-119998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaK (cd04336), PRK06498 (isocitrate lyase; Provisional), RVT-GII, GIIM (pfam08388), EthD (pfam07110), SnoaL_4 (pfam13577)