myRT

myRT report for GCA_001991565.1_ASM199156v1

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Seq: MUQD01000086.1 Burkholderia cenocepacia strain VC6906 VC6906_contig-1000010, whole genome shotgun sequence (46139 bp)
Overview 1 RT 1: 35675-42648 bp Neighborhood of RT #1 [35675, 42695] DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 35675-35980 bp Feature: gene Location: 36117-37172 bp Ori: ONO90666.1 Feature: domain Description: DEXHc_Snf Location: 36336-36591 bp Feature: domain Description: DEXHc_Snf Location: 36336-36591 bp Feature: gene Location: 37768-38838 bp Feature: domain Description: RVT_N Location: 37825-38062 bp Feature: domain Description: RVT_N Location: 37825-38062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38113-38764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 1 3-38764 bp Feature: gene Location: 38969-41884 bp Ori: ONO90667.1 Feature: domain Description: DUF4158 Location: 39008-39473 bp Feature: domain Description: DUF41 58 Location: 39008-39473 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 40661-41807 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 40661 -41 807 bp Feature: gene Location: 42030-42695 bp Feature: domain Description: GIIM Note: maturase Location: 42033-42258 bp Feature: domain Description: GIIM Note: maturase Location: 42033-42258 bp Feature: domain Description: HNHc Note: nucleases Location: 42492-42648 bp Feature: domain Description: HNHc Note: nucleases Location: 42492-42648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUQD01000066.1 Burkholderia cenocepacia strain VC6906 VC6906_contig-8, whole genome shotgun sequence (141727 bp)
Overview 1 RT 1: 125586-129401 bp Neighborhood of RT #1 [125586, 129406] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125586-125915 bp Ori: ONO93566.1 Feature: domain Description: Histone_HNS Location: 125607-125844 bp Feature: domain Description: Histone_HNS Location: 12 5607-12 5844 bp Feature: gene Location: 126062-126268 bp Feature: gene Location: 126241-127590 bp Ori: ONO93568.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126706-127342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 6706-12 7342 bp Feature: gene Location: 127844-128416 bp Ori: ONO93569.1 Feature: domain Description: FIN Location: 128030-128381 bp Feature: domain Description: FIN Location: 12 8030-12 8381 bp Feature: gene Location: 128651-129406 bp Ori: ONO93570.1 Feature: domain Description: his_ut_repres Location: 128729-129401 bp Feature: domain Description: his_ut_repres Location: 12 872 9-12 9401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQD01000059.1 Burkholderia cenocepacia strain VC6906 VC6906_contig-7, whole genome shotgun sequence (67585 bp)
Overview 1 RT 1: 65503-67406 bp Neighborhood of RT #1 [65503, 67564] PRK12511 COG4315 RVT-GII GIIM Feature: gene Location: 65503-66018 bp Ori: ONO95096.1 Feature: domain Description: PRK12511 Location: 65515-66010 bp Feature: domain Description: PRK12511 Location: 65515-66010 bp Feature: gene Location: 66046-66405 bp Ori: ONO95097.1 Feature: domain Description: COG4315 Location: 66067-66403 bp Feature: domain Description: COG43 15 Location: 66067-66403 bp Feature: gene Location: 66686-67564 bp Ori: ONO95098.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66695-67145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66695-67145 bp Feature: domain Description: GIIM Note: maturase Location: 67205-67406 bp Feature: domain Description: GIIM Note: maturase Location: 67205-67406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388)

Seq: MUQD01000008.1 Burkholderia cenocepacia strain VC6906 VC6906_contig-7000000, whole genome shotgun sequence (155471 bp)
Overview 1 RT 1: 103205-107594 bp Neighborhood of RT #1 [103205, 107617] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 103205-103465 bp Feature: gene Location: 103480-105381 bp Ori: ONP04117.1 Feature: domain Description: Dcm Location: 103513-104119 bp Feature: domain Description: Dcm Location: 103513-104 119 bp Feature: domain Description: Dcm Location: 105118-105277 bp Feature: domain Description: Dcm Location: 105118-105277 bp Feature: gene Location: 105440-106438 bp Ori: ONP04118.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105533-106220 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105533-106220 bp Feature: gene Location: 106782-107138 bp Ori: ONP04119.1 Feature: domain Description: Avd_like Location: 106809-107115 bp Feature: domain Description: Avd_like Location: 106809-107115 bp Feature: gene Location: 107153-107617 bp Ori: ONP04120.1 Feature: domain Description: DUF1566 Location: 107414-107594 bp Feature: domain Description: DUF1566 Location: 1074 14 -107594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUQD01000105.1 Burkholderia cenocepacia strain VC6906 VC6906_contig-13, whole genome shotgun sequence (95558 bp)
Overview 1 RT 1: 90164-95493 bp Neighborhood of RT #1 [90164, 95558] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 90164-90853 bp Feature: gene Location: 91105-93120 bp Ori: ONO87187.1 Feature: domain Description: HATPase_c_3 Location: 91174-91498 bp Feature: domain Description: HATPase_c_3 Location: 91174-91498 bp Feature: gene Location: 93648-95102 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 93657-94131 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 9365 7-94131 bp Feature: gene Location: 95151-95558 bp Ori: ONO87197.1 Feature: domain Description: rve_3 Location: 95295-95493 bp Feature: domain Description: rve_3 Location: 95 295 -95 493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUQD01000052.1 Burkholderia cenocepacia strain VC6906 VC6906_contig-7000005, whole genome shotgun sequence (4669 bp)
Overview 1 RT 1: 1436-4424 bp Neighborhood of RT #1 [1436, 4582] COG3547 RVT-GII GIIM Feature: gene Location: 1436-1630 bp Feature: gene Location: 2010-3044 bp Ori: ONO96442.1 Feature: domain Description: COG3547 Location: 2025-2988 bp Feature: domain Description: COG3547 Location: 2025-2988 bp Feature: gene Location: 3215-4582 bp Ori: ONO96443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-416 3 bp Feature: domain Description: GIIM Note: maturase Location: 4223-4424 bp Feature: domain Description: GIIM Note: maturase Location: 4223-4424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)