myRT

myRT report for GCA_001991595.1_ASM199159v1

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Seq: MUQF01000077.1 Burkholderia cenocepacia strain VC7488 VC7488_contig-2000009, whole genome shotgun sequence (45966 bp)
Overview 1 RT 1: 3445-10465 bp Neighborhood of RT #1 [3445, 10465] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 3445-4110 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: gene Location: 4256-7171 bp Ori: ONP02406.1 Feature: domain Description: DUF4158 Location: 4295-4760 bp Feature: domain Description: DUF41 58 Location: 4295-4760 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: gene Location: 7302-8372 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: gene Location: 8968-10023 bp Ori: ONP02407.1 Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: domain Description: DEXHc_Snf Location: 91 87-9442 bp Feature: gene Location: 10160-10465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUQF01000134.1 Burkholderia cenocepacia strain VC7488 VC7488_contig-9000015, whole genome shotgun sequence (11155 bp)
Overview 1 RT 1: 7922-10910 bp Neighborhood of RT #1 [7922, 11068] COG3547 RVT-GII GIIM Feature: gene Location: 7922-8116 bp Feature: gene Location: 8496-9530 bp Ori: ONO92087.1 Feature: domain Description: COG3547 Location: 8511-9474 bp Feature: domain Description: COG3547 Location: 8511-9474 bp Feature: gene Location: 9701-11068 bp Ori: ONO92088.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10034-10649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10034-10649 bp Feature: domain Description: GIIM Note: maturase Location: 10709-10910 bp Feature: domain Description: GIIM Note: maturase Location: 10709-10910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUQF01000109.1 Burkholderia cenocepacia strain VC7488 VC7488_contig-13, whole genome shotgun sequence (265682 bp)
Overview 1 RT 1: 260288-265617 bp Neighborhood of RT #1 [260288, 265682] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 260288-260977 bp Feature: gene Location: 261229-263244 bp Ori: ONO96115.1 Feature: domain Description: HATPase_c_3 Location: 261298-261622 bp Feature: domain Description: HATPase_c_3 Location: 261298-261622 bp Feature: gene Location: 263772-265226 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 263781-264255 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 263 781-264255 bp Feature: gene Location: 265275-265682 bp Ori: ONO96129.1 Feature: domain Description: rve_3 Location: 265419-265617 bp Feature: domain Description: rve_3 Location: 265419-265617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUQF01000062.1 Burkholderia cenocepacia strain VC7488 VC7488_contig-1000007, whole genome shotgun sequence (141243 bp)
Overview 1 RT 1: 125549-129364 bp Neighborhood of RT #1 [125549, 129369] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125549-125878 bp Ori: ONP04701.1 Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: gene Location: 126025-126231 bp Feature: gene Location: 126204-127553 bp Ori: ONP04703.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: gene Location: 127807-128379 bp Ori: ONP04704.1 Feature: domain Description: FIN Location: 127993-128344 bp Feature: domain Description: FIN Location: 127993-12834 4 bp Feature: gene Location: 128614-129369 bp Ori: ONP04705.1 Feature: domain Description: his_ut_repres Location: 128692-129364 bp Feature: domain Description: his_ut_repres Location: 128692-129364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQF01000116.1 Burkholderia cenocepacia strain VC7488 VC7488_contig-1000014, whole genome shotgun sequence (41042 bp)
Overview 1 RT 1: 1-3666 bp Neighborhood of RT #1 [1, 3674] COG3547 RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 1-953 bp Ori: ONO94792.1 Feature: domain Description: COG3547 Location: 16-949 bp Feature: domain Description: COG35 47 Location: 16-949 bp Feature: gene Location: 1124-2491 bp Ori: ONO94793.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1457-2072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 7-2072 bp Feature: domain Description: GIIM Note: maturase Location: 2132-2333 bp Feature: domain Description: GIIM Note: maturase Location: 2132-2333 bp Feature: gene Location: 2772-3131 bp Ori: ONO94794.1 Feature: domain Description: COG4315 Location: 2793-3129 bp Feature: domain Description: COG4315 Location: 2793-3129 bp Feature: gene Location: 3159-3674 bp Ori: ONO94795.1 Feature: domain Description: PRK12511 Location: 3171-3666 bp Feature: domain Description: PRK125 11 Location: 3171-3666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)