myRT

myRT report for GCA_001991615.1_ASM199161v1

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Seq: MUQV01000236.1 Burkholderia cenocepacia strain VC13300 VC13300_contig-5000013, whole genome shotgun sequence (60520 bp)
Overview 1 RT 1: 1-4337 bp Neighborhood of RT #1 [1, 4402] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 1-446 bp Feature: domain Description: COG3547 Location: 16-445 bp Feature: domain Description: COG3547 Location: 1 6-445 bp Feature: gene Location: 611-2008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944-1 562 bp Feature: domain Description: GIIM Note: maturase Location: 1613-1823 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 3-1 823 bp Feature: gene Location: 2098-2736 bp Feature: domain Description: AcrR Location: 2161-2722 bp Feature: domain Description: AcrR Location: 21 61 -2722 bp Feature: gene Location: 2882-4402 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2924-4337 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2924-4337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), AcrR (COG1309), MFS_MMR_MDR_like (cd17504), RVT-GII, GIIM (pfam08388)

Seq: MUQV01000088.1 Burkholderia cenocepacia strain VC13300 VC13300_contig-3000005, whole genome shotgun sequence (13409 bp)
Overview 1 RT 1: 3730-9415 bp Neighborhood of RT #1 [3730, 9459] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3730-4242 bp Feature: domain Description: SnoaL_4 Location: 3751-4120 bp Feature: domain Description: SnoaL_4 Location: 3751-412 0 bp Feature: gene Location: 4295-5011 bp Feature: domain Description: EthD Location: 4361-4547 bp Feature: domain Description: EthD Location: 4361-4547 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: domain Description: EthD Location: 4685-4958 bp Feature: gene Location: 5108-6349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-5918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-5918 bp Feature: domain Description: GIIM Note: maturase Location: 5969-6173 bp Feature: domain Description: GIIM Note: maturase Location: 5969-6173 bp Feature: gene Location: 6948-8531 bp Feature: domain Description: PRK06498 Location: 6951-8529 bp Feature: domain Description: PRK06498 Location: 6951-852 9 bp Feature: gene Location: 8938-9459 bp Feature: domain Description: YeaK Location: 8959-9415 bp Feature: domain Description: YeaK Location: 8959-9415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUQV01000059.1 Burkholderia cenocepacia strain VC13300 VC13300_contig-5000003, whole genome shotgun sequence (218300 bp)
Overview 1 RT 1: 205940-209755 bp Neighborhood of RT #1 [205940, 209760] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 205940-206269 bp Feature: domain Description: Histone_HNS Location: 205961-206198 bp Feature: domain Description: Histone_HNS Location: 205961-206198 bp Feature: gene Location: 206416-206622 bp Feature: gene Location: 206595-207944 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 207060-207696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 207060-207696 bp Feature: gene Location: 208198-208770 bp Feature: domain Description: FIN Location: 208384-208735 bp Feature: domain Description: FIN Location: 2083 84-20873 5 bp Feature: gene Location: 209005-209760 bp Feature: domain Description: his_ut_repres Location: 209083-209755 bp Feature: domain Description: his_ut_repres Location: 209083 -209755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)