myRT

myRT report for GCA_001991665.1_ASM199166v1

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Seq: MURM01000016.1 Burkholderia cenocepacia strain VC14013 VC14013_contig-3000001, whole genome shotgun sequence (61771 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 542-21 60 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 221 1 -2421 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MURM01000031.1 Burkholderia cenocepacia strain VC14013 VC14013_contig-2, whole genome shotgun sequence (210092 bp)
Overview 1 RT 1: 80394-84143 bp Neighborhood of RT #1 [80394, 84214] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 80394-81149 bp Feature: domain Description: his_ut_repres Location: 80472-81144 bp Feature: domain Description: his_ut_repres Location: 80472 -81144 bp Feature: gene Location: 81384-81956 bp Feature: domain Description: FIN Location: 81570-81921 bp Feature: domain Description: FIN Location: 81570-8192 1 bp Feature: gene Location: 82210-83559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82675-83311 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82 675-83311 bp Feature: gene Location: 83532-83738 bp Feature: gene Location: 83885-84214 bp Feature: domain Description: Histone_HNS Location: 83906-84143 bp Feature: domain Description: Histone_HNS Location: 83906-84143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MURM01000004.1 Burkholderia cenocepacia strain VC14013 VC14013_contig-3000000, whole genome shotgun sequence (19289 bp)
Overview 1 RT 1: 3854-9539 bp Neighborhood of RT #1 [3854, 9583] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3854-4366 bp Feature: domain Description: SnoaL_4 Location: 3875-4244 bp Feature: domain Description: SnoaL_4 Location: 3 875-4244 bp Feature: gene Location: 4419-5135 bp Feature: domain Description: EthD Location: 4485-4671 bp Feature: domain Description: EthD Location: 4485-4671 bp Feature: domain Description: EthD Location: 4809-5082 bp Feature: domain Description: EthD Location: 4809-5082 bp Feature: gene Location: 5232-6473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5424-6042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5424-6042 bp Feature: domain Description: GIIM Note: maturase Location: 6093-6297 bp Feature: domain Description: GIIM Note: maturase Location: 6093 -6297 bp Feature: gene Location: 7072-8655 bp Feature: domain Description: PRK06498 Location: 7075-8653 bp Feature: domain Description: PRK06498 Location: 7075-8653 bp Feature: gene Location: 9062-9583 bp Feature: domain Description: YeaK Location: 9083-9539 bp Feature: domain Description: YeaK Location: 9083 -953 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)