myRT

myRT report for GCA_001991695.1_ASM199169v1

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Seq: MUQM01000082.1 Burkholderia cenocepacia strain VC5732 VC5732_contig-1000008, whole genome shotgun sequence (193631 bp)
Overview 1 RT 1: 125888-129703 bp Neighborhood of RT #1 [125888, 129708] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125888-126217 bp Feature: domain Description: Histone_HNS Location: 125909-126146 bp Feature: domain Description: Histone_HNS Location: 1 25909-1 261 46 bp Feature: gene Location: 126364-126570 bp Feature: gene Location: 126543-127892 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127008-127644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 27008-1 27644 bp Feature: gene Location: 128146-128718 bp Feature: domain Description: FIN Location: 128332-128683 bp Feature: domain Description: FIN Location: 1 28332-1 28683 bp Feature: gene Location: 128953-129708 bp Feature: domain Description: his_ut_repres Location: 129031-129703 bp Feature: domain Description: his_ut_repres Location: 1 29031 -1 29703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUQM01000154.1 Burkholderia cenocepacia strain VC5732 VC5732_contig-15, whole genome shotgun sequence (19394 bp)
Overview 1 RT 1: 3725-9410 bp Neighborhood of RT #1 [3725, 9454] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3725-4237 bp Feature: domain Description: SnoaL_4 Location: 3746-4115 bp Feature: domain Description: SnoaL_4 Location: 3746-4115 bp Feature: gene Location: 4290-5006 bp Feature: domain Description: EthD Location: 4356-4542 bp Feature: domain Description: EthD Location: 4356-4542 bp Feature: domain Description: EthD Location: 4680-4953 bp Feature: domain Description: EthD Location: 4680-4953 bp Feature: gene Location: 5103-6344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5295-5913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 95-5913 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6168 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6168 bp Feature: gene Location: 6943-8526 bp Feature: domain Description: PRK06498 Location: 6946-8524 bp Feature: domain Description: PRK06498 Location: 6946-852 4 bp Feature: gene Location: 8933-9454 bp Feature: domain Description: YeaK Location: 8954-9410 bp Feature: domain Description: YeaK Location: 8954-9410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)

Seq: MUQM01000006.1 Burkholderia cenocepacia strain VC5732 VC5732_contig-5000000, whole genome shotgun sequence (61790 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3 547 Location: 25-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2759-3 3 20 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3 522-493 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)