myRT

myRT report for GCA_001991815.1_ASM199181v1

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Seq: MURH01000124.1 Burkholderia cenocepacia strain VC10287 VC10287_contig-11, whole genome shotgun sequence (295763 bp)
Overview 1 RT 1: 175495-179244 bp Neighborhood of RT #1 [175495, 179315] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 175495-176250 bp Feature: domain Description: his_ut_repres Location: 175573-176245 bp Feature: domain Description: his_ut_repres Location: 1 75573-1 76245 bp Feature: gene Location: 176485-177057 bp Feature: domain Description: FIN Location: 176671-177022 bp Feature: domain Description: FIN Location: 1 76671 -1 77022 bp Feature: gene Location: 177311-178660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177776-178412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 77776-1 7841 2 bp Feature: gene Location: 178633-178839 bp Feature: gene Location: 178986-179315 bp Feature: domain Description: Histone_HNS Location: 179007-179244 bp Feature: domain Description: Histone_HNS Location: 1 79007-1 79244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MURH01000016.1 Burkholderia cenocepacia strain VC10287 VC10287_contig-5000001, whole genome shotgun sequence (61790 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 2 5-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542 -2 160 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 11-2 42 1 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2 759-332 0 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 352 2 -4935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MURH01000002.1 Burkholderia cenocepacia strain VC10287 VC10287_contig-1000000, whole genome shotgun sequence (124091 bp)
Overview 1 RT 1: 114438-120045 bp Neighborhood of RT #1 [114438, 120167] YeaK PRK06498 RVT-GII GIIM EthD EthD SnoaL_4 Feature: gene Location: 114438-114959 bp Feature: domain Description: YeaK Location: 114459-114915 bp Feature: domain Description: YeaK Location: 114459-114915 bp Feature: gene Location: 115366-116949 bp Feature: domain Description: PRK06498 Location: 115369-116947 bp Feature: domain Description: PRK06498 Location: 1153 69-116947 bp Feature: gene Location: 117548-118789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117740-118358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117740-1183 58 bp Feature: domain Description: GIIM Note: maturase Location: 118409-118613 bp Feature: domain Description: GIIM Note: maturase Location: 118409-118613 bp Feature: gene Location: 118886-119602 bp Feature: domain Description: EthD Location: 118952-119138 bp Feature: domain Description: EthD Location: 118952-11913 8 bp Feature: domain Description: EthD Location: 119276-119549 bp Feature: domain Description: EthD Location: 119276-119549 bp Feature: gene Location: 119655-120167 bp Feature: domain Description: SnoaL_4 Location: 119676-120045 bp Feature: domain Description: SnoaL_4 Location: 119676-120045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaK (cd04336), PRK06498 (isocitrate lyase; Provisional), RVT-GII, GIIM (pfam08388), EthD (pfam07110), SnoaL_4 (pfam13577)