myRT

myRT report for GCA_001991875.1_ASM199187v1

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Seq: MURO01000015.1 Burkholderia cenocepacia strain VC15235 VC15235_contig-2000001, whole genome shotgun sequence (264642 bp)
Overview 1 RT 1: 126529-130344 bp Neighborhood of RT #1 [126529, 130349] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 126529-126858 bp Feature: domain Description: Histone_HNS Location: 126550-126787 bp Feature: domain Description: Histone_HNS Location: 1 26550-1 26787 bp Feature: gene Location: 127005-127211 bp Feature: gene Location: 127184-128533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127649-128285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 27649-1 28285 bp Feature: gene Location: 128787-129359 bp Feature: domain Description: FIN Location: 128973-129324 bp Feature: domain Description: FIN Location: 1 28973-1 29324 bp Feature: gene Location: 129594-130349 bp Feature: domain Description: his_ut_repres Location: 129672-130344 bp Feature: domain Description: his_ut_repres Location: 1 29672-1 30344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MURO01000191.1 Burkholderia cenocepacia strain VC15235 VC15235_contig-2000015, whole genome shotgun sequence (61790 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 2 5-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542 -2 160 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 11-2 42 1 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2 759-332 0 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 352 2 -4935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MURO01000002.1 Burkholderia cenocepacia strain VC15235 VC15235_contig-1000000, whole genome shotgun sequence (124142 bp)
Overview 1 RT 1: 114534-120141 bp Neighborhood of RT #1 [114534, 120263] YeaK PRK06498 RVT-GII GIIM EthD EthD SnoaL_4 Feature: gene Location: 114534-115055 bp Feature: domain Description: YeaK Location: 114555-115011 bp Feature: domain Description: YeaK Location: 114555-115011 bp Feature: gene Location: 115462-117045 bp Feature: domain Description: PRK06498 Location: 115465-117043 bp Feature: domain Description: PRK06498 Location: 115465-117043 bp Feature: gene Location: 117644-118885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117836-118454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11783 6-118454 bp Feature: domain Description: GIIM Note: maturase Location: 118505-118709 bp Feature: domain Description: GIIM Note: maturase Location: 118505-118709 bp Feature: gene Location: 118982-119698 bp Feature: domain Description: EthD Location: 119048-119234 bp Feature: domain Description: EthD Location: 119048-11923 4 bp Feature: domain Description: EthD Location: 119372-119645 bp Feature: domain Description: EthD Location: 1193 72-119645 bp Feature: gene Location: 119751-120263 bp Feature: domain Description: SnoaL_4 Location: 119772-120141 bp Feature: domain Description: SnoaL_4 Location: 119772-120141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaK (cd04336), PRK06498 (isocitrate lyase; Provisional), RVT-GII, GIIM (pfam08388), EthD (pfam07110), SnoaL_4 (pfam13577)