myRT

myRT report for GCA_001991885.1_ASM199188v1

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Seq: MURQ01000126.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-4000010, whole genome shotgun sequence (82710 bp)
Overview 1 RT 1: 95-3277 bp Neighborhood of RT #1 [95, 3309] RVT-GII D Feature: gene Location: 95-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1 1 96 bp Feature: gene Location: 1755-2051 bp Feature: gene Location: 2239-3309 bp Feature: domain Description: D Location: 2293-3277 bp Feature: domain Description: D Location: 2293-3277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURQ01000048.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-6000003, whole genome shotgun sequence (3250 bp)
Overview 1 RT 1: 1-3153 bp Neighborhood of RT #1 [1, 3206] PRK09409 RVT-GII HTH_Tnp_1 HTH_Tnp_1 Feature: gene Location: 1-575 bp Feature: gene Location: 846-1733 bp Feature: domain Description: PRK09409 Location: 849-1716 bp Feature: domain Description: PRK09409 Location: 849-1716 bp Feature: gene Location: 1764-2699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-2691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 175-2 691 bp Feature: gene Location: 2838-3043 bp Feature: domain Description: HTH_Tnp_1 Location: 2949-3042 bp Feature: domain Description: HTH_Tnp_1 Location: 2 949-3042 bp Feature: gene Location: 2943-3206 bp Feature: domain Description: HTH_Tnp_1 Location: 2949-3153 bp Feature: domain Description: HTH_Tnp_1 Location: 2 949-3153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527), PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: MURQ01000142.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-3000012, whole genome shotgun sequence (46370 bp)
Overview 1 RT 1: 44141-46362 bp Neighborhood of RT #1 [44141, 46370] RVT-GII Feature: gene Location: 44141-44356 bp Feature: gene Location: 44519-44938 bp Feature: gene Location: 45510-46370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45921-46362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45921-463 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MURQ01000148.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-13, whole genome shotgun sequence (70932 bp)
Overview 1 RT 1: 67624-70407 bp Neighborhood of RT #1 [67624, 70838] D RVT-GII Feature: gene Location: 67624-68694 bp Feature: domain Description: D Location: 67678-68662 bp Feature: domain Description: D Location: 67678-68662 bp Feature: gene Location: 68882-69178 bp Feature: gene Location: 69306-70838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69717-70407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69717-704 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURQ01000108.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-14000007, whole genome shotgun sequence (202738 bp)
Overview 1 RT 1: 149924-153739 bp Neighborhood of RT #1 [149924, 153744] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 149924-150253 bp Feature: domain Description: Histone_HNS Location: 149945-150182 bp Feature: domain Description: Histone_HNS Location: 149945 -15 0182 bp Feature: gene Location: 150400-150606 bp Feature: gene Location: 150579-151928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 151044-151680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 1044-15 1680 bp Feature: gene Location: 152182-152754 bp Feature: domain Description: FIN Location: 152368-152719 bp Feature: domain Description: FIN Location: 15 2368-15 2719 bp Feature: gene Location: 152989-153744 bp Feature: domain Description: his_ut_repres Location: 153067-153739 bp Feature: domain Description: his_ut_repres Location: 15 3067-15 3739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MURQ01000139.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-12, whole genome shotgun sequence (138541 bp)
Overview 1 RT 1: 166-3637 bp Neighborhood of RT #1 [166, 3651] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1653-2618 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: domain Description: GDP_MD_SDR_e Location: 16 89-2586 bp Feature: gene Location: 2605-3651 bp Feature: domain Description: Gmd Location: 2620-3637 bp Feature: domain Description: Gmd Location: 26 20-36 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), Gmd (COG1089)

Seq: MURQ01000110.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-1000008, whole genome shotgun sequence (64042 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 117 4-137 5 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 17 55-4098 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 47 08-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MURQ01000066.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-12000004, whole genome shotgun sequence (71057 bp)
Overview 1 RT 1: 66782-70532 bp Neighborhood of RT #1 [66782, 70963] SRAP RVT-GII Feature: gene Location: 66782-67768 bp Feature: gene Location: 68464-69375 bp Feature: domain Description: SRAP Location: 68824-69340 bp Feature: domain Description: SRAP Location: 68 8 24-69340 bp Feature: gene Location: 69431-70963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69842-70532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698 42-70532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MURQ01000125.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-3000010, whole genome shotgun sequence (21520 bp)
Overview 1 RT 1: 18144-21512 bp Neighborhood of RT #1 [18144, 21520] PolY_like COG4544 RVT-GII Feature: gene Location: 18144-19622 bp Feature: domain Description: PolY_like Location: 18162-19149 bp Feature: domain Description: PolY_like Location: 18162-19 149 bp Feature: gene Location: 19543-20259 bp Feature: domain Description: COG4544 Location: 19648-20083 bp Feature: domain Description: COG4544 Location: 19 648-20083 bp Feature: gene Location: 20660-21520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21071-21512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21071-21512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MURQ01000049.1 Burkholderia cenocepacia strain VC4927 VC4927_contig-7000003, whole genome shotgun sequence (3274 bp)
Overview 1 RT 1: 7-3029 bp Neighborhood of RT #1 [7, 3187] COG3547 RVT-GII GIIM Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: gene Location: 1820-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )