myRT

myRT report for GCA_001991915.1_ASM199191v1

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Seq: MURT01000019.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-6000001, whole genome shotgun sequence (47463 bp)
Overview 1 RT 1: 44567-47037 bp Neighborhood of RT #1 [44567, 47463] RVT-GII Feature: gene Location: 44567-44782 bp Feature: gene Location: 44945-45364 bp Feature: gene Location: 45936-47463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46347-47037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46347-47037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MURT01000146.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-1000014, whole genome shotgun sequence (84221 bp)
Overview 1 RT 1: 80913-83696 bp Neighborhood of RT #1 [80913, 84127] D RVT-GII Feature: gene Location: 80913-81983 bp Feature: domain Description: D Location: 80967-81951 bp Feature: domain Description: D Location: 80967-81951 bp Feature: gene Location: 82171-82467 bp Feature: gene Location: 82595-84127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83006-83696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83006-83696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURT01000154.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-15, whole genome shotgun sequence (59573 bp)
Overview 1 RT 1: 55298-59048 bp Neighborhood of RT #1 [55298, 59479] SRAP RVT-GII Feature: gene Location: 55298-56284 bp Feature: gene Location: 56980-57891 bp Feature: domain Description: SRAP Location: 57340-57856 bp Feature: domain Description: SRAP Location: 573 40-57856 bp Feature: gene Location: 57947-59479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58358-59048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583 58-59048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MURT01000113.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-6000010, whole genome shotgun sequence (22237 bp)
Overview 1 RT 1: 18194-21811 bp Neighborhood of RT #1 [18194, 22237] PolY_like COG4544 RVT-GII Feature: gene Location: 18194-19672 bp Feature: domain Description: PolY_like Location: 18212-19199 bp Feature: domain Description: PolY_like Location: 18212-19199 bp Feature: gene Location: 19593-20309 bp Feature: domain Description: COG4544 Location: 19698-20133 bp Feature: domain Description: COG4 54 4 Location: 19698-20133 bp Feature: gene Location: 20710-22237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21121-21811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21121-21811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MURT01000133.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-12, whole genome shotgun sequence (265301 bp)
Overview 1 RT 1: 166-3637 bp Neighborhood of RT #1 [166, 3651] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1653-2618 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-25 86 bp Feature: gene Location: 2605-3651 bp Feature: domain Description: Gmd Location: 2620-3637 bp Feature: domain Description: Gmd Location: 2620-3637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), Gmd (COG1089)

Seq: MURT01000082.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-1000008, whole genome shotgun sequence (62331 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MURT01000070.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-3000006, whole genome shotgun sequence (30505 bp)
Overview 1 RT 1: 20358-23909 bp Neighborhood of RT #1 [20358, 23917] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 20358-20690 bp Feature: domain Description: TnpB_IS66 Location: 20385-20673 bp Feature: domain Description: TnpB_IS66 Location: 20385-2067 3 bp Feature: gene Location: 20694-21016 bp Feature: gene Location: 21020-21994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21431-21950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21431-21950 bp Feature: gene Location: 21986-22873 bp Feature: domain Description: PRK09409 Location: 21989-22856 bp Feature: domain Description: PRK09409 Location: 21989-22856 bp Feature: gene Location: 23144-23917 bp Feature: domain Description: PRK09183 Location: 23147-23909 bp Feature: domain Description: PRK09183 Location: 23147 -23909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: MURT01000035.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-14000002, whole genome shotgun sequence (154136 bp)
Overview 1 RT 1: 587-4279 bp Neighborhood of RT #1 [587, 4350] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 587-1285 bp Feature: domain Description: his_ut_repres Location: 608-1280 bp Feature: domain Description: his_ut_repres Location: 608 -128 0 bp Feature: gene Location: 1520-2092 bp Feature: domain Description: FIN Location: 1706-2057 bp Feature: domain Description: FIN Location: 1706-2057 bp Feature: gene Location: 2346-3695 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2811-3447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28 11-3447 bp Feature: gene Location: 3668-3874 bp Feature: gene Location: 4021-4350 bp Feature: domain Description: Histone_HNS Location: 4042-4279 bp Feature: domain Description: Histone_HNS Location: 4042-4279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), his_ut_repres (TIGR02018)

Seq: MURT01000121.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-15000010, whole genome shotgun sequence (281907 bp)
Overview 1 RT 1: 30029-35313 bp Neighborhood of RT #1 [30029, 35327] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 30029-30328 bp Feature: gene Location: 30637-31671 bp Feature: domain Description: COG3547 Location: 30652-31615 bp Feature: domain Description: COG3547 Location: 30652-31615 bp Feature: gene Location: 31842-33209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32175-32790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32175-3279 0 bp Feature: domain Description: GIIM Note: maturase Location: 32850-33051 bp Feature: domain Description: GIIM Note: maturase Location: 32850-33051 bp Feature: gene Location: 33329-34294 bp Feature: domain Description: GDP_MD_SDR_e Location: 33365-34262 bp Feature: domain Description: GDP_MD_SDR_e Location: 33365-34262 bp Feature: gene Location: 34281-35327 bp Feature: domain Description: Gmd Location: 34296-35313 bp Feature: domain Description: Gmd Location: 3429 6-35313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MURT01000055.1 Burkholderia cenocepacia strain VC7233 VC7233_contig-5, whole genome shotgun sequence (59472 bp)
Overview 1 RT 1: 49135-52884 bp Neighborhood of RT #1 [49135, 52955] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49135-49890 bp Feature: domain Description: his_ut_repres Location: 49213-49885 bp Feature: domain Description: his_ut_repres Location: 49213-49885 bp Feature: gene Location: 50125-50697 bp Feature: domain Description: FIN Location: 50311-50662 bp Feature: domain Description: FIN Location: 50311-50662 bp Feature: gene Location: 50951-52300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51416-52052 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51416-52052 bp Feature: gene Location: 52273-52479 bp Feature: gene Location: 52626-52955 bp Feature: domain Description: Histone_HNS Location: 52647-52884 bp Feature: domain Description: Histone_HNS Location: 52647-52884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)