myRT

myRT report for GCA_001991955.1_ASM199195v1

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Seq: MURS01000099.1 Burkholderia cenocepacia strain VC6533 VC6533_contig-9000010, whole genome shotgun sequence (22088 bp)
Overview 1 RT 1: 18045-21662 bp Neighborhood of RT #1 [18045, 22088] PolY_like COG4544 RVT-GII Feature: gene Location: 18045-19523 bp Feature: domain Description: PolY_like Location: 18063-19050 bp Feature: domain Description: PolY_like Location: 1 8063-1 9050 bp Feature: gene Location: 19444-20160 bp Feature: domain Description: COG4544 Location: 19549-19984 bp Feature: domain Description: COG4544 Location: 1 9549-1 9984 bp Feature: gene Location: 20561-22088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20972-21662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20972-21 662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MURS01000074.1 Burkholderia cenocepacia strain VC6533 VC6533_contig-8, whole genome shotgun sequence (59853 bp)
Overview 1 RT 1: 370-4551 bp Neighborhood of RT #1 [370, 4551] RVT-GII SRAP Feature: gene Location: 370-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: gene Location: 1958-2869 bp Feature: domain Description: SRAP Location: 2318-2834 bp Feature: domain Description: SRAP Location: 2 318-2 834 bp Feature: gene Location: 3565-4551 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MURS01000048.1 Burkholderia cenocepacia strain VC6533 VC6533_contig-5, whole genome shotgun sequence (126058 bp)
Overview 1 RT 1: 49073-52823 bp Neighborhood of RT #1 [49073, 52894] MngR FIN RVT-Retrons Histone_HNS Feature: gene Location: 49073-49829 bp Feature: domain Description: MngR Location: 49145-49328 bp Feature: domain Description: MngR Location: 49145-493 28 bp Feature: gene Location: 50064-50636 bp Feature: domain Description: FIN Location: 50250-50601 bp Feature: domain Description: FIN Location: 50250-50601 bp Feature: gene Location: 50890-52239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51355-51991 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 513 55-51991 bp Feature: gene Location: 52212-52418 bp Feature: gene Location: 52565-52894 bp Feature: domain Description: Histone_HNS Location: 52586-52823 bp Feature: domain Description: Histone_HNS Location: 52586-52823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MngR (COG2188), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MURS01000013.1 Burkholderia cenocepacia strain VC6533 VC6533_contig-5000001, whole genome shotgun sequence (39254 bp)
Overview 1 RT 1: 36358-38828 bp Neighborhood of RT #1 [36358, 39254] RVT-GII Feature: gene Location: 36358-36573 bp Feature: gene Location: 36736-37155 bp Feature: gene Location: 37727-39254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38138-38828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38138-38828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MURS01000046.1 Burkholderia cenocepacia strain VC6533 VC6533_contig-7000004, whole genome shotgun sequence (5576 bp)
Overview 1 RT 1: 899-4450 bp Neighborhood of RT #1 [899, 4458] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 899-1231 bp Feature: domain Description: TnpB_IS66 Location: 926-1214 bp Feature: domain Description: TnpB_IS66 Location: 926-1214 bp Feature: gene Location: 1235-1557 bp Feature: gene Location: 1561-2496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972-2488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1972-2488 bp Feature: gene Location: 2527-3414 bp Feature: domain Description: PRK09409 Location: 2530-3397 bp Feature: domain Description: PRK09409 Location: 25 30-3397 bp Feature: gene Location: 3685-4458 bp Feature: domain Description: PRK09183 Location: 3688-4450 bp Feature: domain Description: PRK09183 Location: 3688-445 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional), TnpB_IS66 (pfam05717)

Seq: MURS01000114.1 Burkholderia cenocepacia strain VC6533 VC6533_contig-12, whole genome shotgun sequence (261599 bp)
Overview 1 RT 1: 10-4686 bp Neighborhood of RT #1 [10, 4700] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: gene Location: 1215-2582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-216 3 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: gene Location: 2702-3667 bp Feature: domain Description: GDP_MD_SDR_e Location: 2738-3635 bp Feature: domain Description: GDP_MD_SDR_e Location: 2738-36 35 bp Feature: gene Location: 3654-4700 bp Feature: domain Description: Gmd Location: 3669-4686 bp Feature: domain Description: Gmd Location: 36 6 9-46 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MURS01000108.1 Burkholderia cenocepacia strain VC6533 VC6533_contig-3000011, whole genome shotgun sequence (83181 bp)
Overview 1 RT 1: 79598-82381 bp Neighborhood of RT #1 [79598, 82812] D RVT-GII Feature: gene Location: 79598-80668 bp Feature: domain Description: D Location: 79652-80636 bp Feature: domain Description: D Location: 7 9652-80636 bp Feature: gene Location: 80856-81152 bp Feature: gene Location: 81280-82812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81691-82381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81691-82381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII