myRT

myRT report for GCA_001991975.1_ASM199197v1

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Seq: MURY01000063.1 Burkholderia cenocepacia strain VC7692 VC7692_contig-5, whole genome shotgun sequence (202794 bp)
Overview 1 RT 1: 49186-52937 bp Neighborhood of RT #1 [49186, 53008] MngR FIN RVT-Retrons Histone_HNS Feature: gene Location: 49186-49943 bp Feature: domain Description: MngR Location: 49258-49441 bp Feature: domain Description: MngR Location: 49258-49441 bp Feature: gene Location: 50178-50750 bp Feature: domain Description: FIN Location: 50364-50715 bp Feature: domain Description: FIN Location: 50364-5071 5 bp Feature: gene Location: 51004-52353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51469-52105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 469-521 05 bp Feature: gene Location: 52326-52532 bp Feature: gene Location: 52679-53008 bp Feature: domain Description: Histone_HNS Location: 52700-52937 bp Feature: domain Description: Histone_HNS Location: 52700-52937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MngR (COG2188), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MURY01000086.1 Burkholderia cenocepacia strain VC7692 VC7692_contig-1000007, whole genome shotgun sequence (73096 bp)
Overview 1 RT 1: 32158-36741 bp Neighborhood of RT #1 [32158, 36741] D RVT-GII Feature: gene Location: 32158-33228 bp Feature: domain Description: D Location: 32212-33196 bp Feature: domain Description: D Location: 32 2 12 -33196 bp Feature: gene Location: 33416-33712 bp Feature: gene Location: 33840-35372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34251-34941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 51-34941 bp Feature: gene Location: 35944-36363 bp Feature: gene Location: 36526-36741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURY01000131.1 Burkholderia cenocepacia strain VC7692 VC7692_contig-8000010, whole genome shotgun sequence (19073 bp)
Overview 1 RT 1: 15030-18647 bp Neighborhood of RT #1 [15030, 19073] PolY_like COG4544 RVT-GII Feature: gene Location: 15030-16508 bp Feature: domain Description: PolY_like Location: 15048-16035 bp Feature: domain Description: PolY_like Location: 15048-1603 5 bp Feature: gene Location: 16429-17145 bp Feature: domain Description: COG4544 Location: 16534-16969 bp Feature: domain Description: COG4544 Location: 1653 4-16969 bp Feature: gene Location: 17546-19073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17957-18647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17957-18647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MURY01000166.1 Burkholderia cenocepacia strain VC7692 VC7692_contig-14, whole genome shotgun sequence (59881 bp)
Overview 1 RT 1: 55331-59081 bp Neighborhood of RT #1 [55331, 59512] SRAP RVT-GII Feature: gene Location: 55331-56317 bp Feature: gene Location: 57013-57924 bp Feature: domain Description: SRAP Location: 57373-57889 bp Feature: domain Description: SRAP Location: 57373-57889 bp Feature: gene Location: 57980-59512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58391-59081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58391-59081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MURY01000088.1 Burkholderia cenocepacia strain VC7692 VC7692_contig-3000007, whole genome shotgun sequence (33686 bp)
Overview 1 RT 1: 1119-4661 bp Neighborhood of RT #1 [1119, 4678] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 1119-1892 bp Feature: domain Description: PRK09183 Location: 1122-1884 bp Feature: domain Description: PRK09183 Location: 1122-1884 bp Feature: gene Location: 2163-3050 bp Feature: domain Description: PRK09409 Location: 2166-3033 bp Feature: domain Description: PRK09409 Location: 2166-3033 bp Feature: gene Location: 3081-4016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3492-4008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3492-4008 bp Feature: gene Location: 4020-4342 bp Feature: gene Location: 4346-4678 bp Feature: domain Description: TnpB_IS66 Location: 4373-4661 bp Feature: domain Description: TnpB_IS66 Location: 4373-4661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MURY01000050.1 Burkholderia cenocepacia strain VC7692 VC7692_contig-14000003, whole genome shotgun sequence (264474 bp)
Overview 1 RT 1: 256935-262233 bp Neighborhood of RT #1 [256935, 262233] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 256935-257981 bp Feature: domain Description: Gmd Location: 256950-257967 bp Feature: domain Description: Gmd Location: 256 950-25796 7 bp Feature: gene Location: 257968-258933 bp Feature: domain Description: GDP_MD_SDR_e Location: 258004-258901 bp Feature: domain Description: GDP_MD_SDR_e Location: 258004-258901 bp Feature: gene Location: 259053-260420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259386-260001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259386 -26 0001 bp Feature: domain Description: GIIM Note: maturase Location: 260061-260262 bp Feature: domain Description: GIIM Note: maturase Location: 26 006 1-26 026 2 bp Feature: gene Location: 260591-261625 bp Feature: domain Description: COG3547 Location: 260606-261569 bp Feature: domain Description: COG3547 Location: 26 06 06 -26 156 9 bp Feature: gene Location: 261934-262233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )