myRT

myRT report for GCA_001991995.1_ASM199199v1

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Seq: MURW01000044.1 Burkholderia cenocepacia strain VC7579 VC7579_contig-9000003, whole genome shotgun sequence (77061 bp)
Overview 1 RT 1: 7-5291 bp Neighborhood of RT #1 [7, 5305] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3547 Location: 630-1 593 bp Feature: gene Location: 1820-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 53-2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: gene Location: 3307-4272 bp Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: gene Location: 4259-5305 bp Feature: domain Description: Gmd Location: 4274-5291 bp Feature: domain Description: Gmd Location: 4274-5291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), COG3547 (Transposase )

Seq: MURW01000075.1 Burkholderia cenocepacia strain VC7579 VC7579_contig-7, whole genome shotgun sequence (59888 bp)
Overview 1 RT 1: 55338-59088 bp Neighborhood of RT #1 [55338, 59519] SRAP RVT-GII Feature: gene Location: 55338-56324 bp Feature: gene Location: 57020-57931 bp Feature: domain Description: SRAP Location: 57380-57896 bp Feature: domain Description: SRAP Location: 57380-57896 bp Feature: gene Location: 57987-59519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58398-59088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58398-59088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MURW01000103.1 Burkholderia cenocepacia strain VC7579 VC7579_contig-6000010, whole genome shotgun sequence (19940 bp)
Overview 1 RT 1: 15897-19514 bp Neighborhood of RT #1 [15897, 19940] PolY_like COG4544 RVT-GII Feature: gene Location: 15897-17375 bp Feature: domain Description: PolY_like Location: 15915-16902 bp Feature: domain Description: PolY_like Location: 15915-16902 bp Feature: gene Location: 17296-18012 bp Feature: domain Description: COG4544 Location: 17401-17836 bp Feature: domain Description: COG4544 Location: 17401-1783 6 bp Feature: gene Location: 18413-19940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18824-19514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18824-19514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MURW01000089.1 Burkholderia cenocepacia strain VC7579 VC7579_contig-2000008, whole genome shotgun sequence (62938 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 99-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174 -1375 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 1755-4 098 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 4 708-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MURW01000079.1 Burkholderia cenocepacia strain VC7579 VC7579_contig-4000007, whole genome shotgun sequence (31354 bp)
Overview 1 RT 1: 7-2319 bp Neighborhood of RT #1 [7, 2336] PRK14702 RVT-GII TnpB_IS66 Feature: gene Location: 7-708 bp Feature: domain Description: PRK14702 Location: 10-688 bp Feature: domain Description: PRK14702 Location: 10-688 bp Feature: gene Location: 739-1674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1150-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 0-1666 bp Feature: gene Location: 1678-2000 bp Feature: gene Location: 2004-2336 bp Feature: domain Description: TnpB_IS66 Location: 2031-2319 bp Feature: domain Description: TnpB_IS66 Location: 2031-2319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK14702 (insertion element IS2 transposase InsD; Provisional)

Seq: MURW01000094.1 Burkholderia cenocepacia strain VC7579 VC7579_contig-7000008, whole genome shotgun sequence (138730 bp)
Overview 1 RT 1: 44573-49124 bp Neighborhood of RT #1 [44573, 49156] RVT-GII D Feature: gene Location: 44573-44788 bp Feature: gene Location: 44951-45370 bp Feature: gene Location: 45942-47474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46353-47043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 353-47043 bp Feature: gene Location: 47602-47898 bp Feature: gene Location: 48086-49156 bp Feature: domain Description: D Location: 48140-49124 bp Feature: domain Description: D Location: 48140-49124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)

Seq: MURW01000024.1 Burkholderia cenocepacia strain VC7579 VC7579_contig-1000002, whole genome shotgun sequence (120412 bp)
Overview 1 RT 1: 48876-52625 bp Neighborhood of RT #1 [48876, 52696] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 48876-49631 bp Feature: domain Description: his_ut_repres Location: 48954-49626 bp Feature: domain Description: his_ut_repres Location: 48954-49626 bp Feature: gene Location: 49866-50438 bp Feature: domain Description: FIN Location: 50052-50403 bp Feature: domain Description: FIN Location: 50052-50403 bp Feature: gene Location: 50692-52041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51157-51793 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51157 -517 93 bp Feature: gene Location: 52014-52220 bp Feature: gene Location: 52367-52696 bp Feature: domain Description: Histone_HNS Location: 52388-52625 bp Feature: domain Description: Histone_HNS Location: 52388-52625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)