myRT

myRT report for GCA_001992005.1_ASM199200v1

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Seq: MURZ01000092.1 Burkholderia cenocepacia strain VC7689 VC7689_contig-4000007, whole genome shotgun sequence (92959 bp)
Overview 1 RT 1: 89376-92159 bp Neighborhood of RT #1 [89376, 92590] D RVT-GII Feature: gene Location: 89376-90446 bp Feature: domain Description: D Location: 89430-90414 bp Feature: domain Description: D Location: 89430-9041 4 bp Feature: gene Location: 90634-90930 bp Feature: gene Location: 91058-92590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91469-92159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 469-921 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MURZ01000015.1 Burkholderia cenocepacia strain VC7689 VC7689_contig-14000000, whole genome shotgun sequence (9138 bp)
Overview 1 RT 1: 4113-9138 bp Neighborhood of RT #1 [4113, 9138] RVT-GII SRAP Feature: gene Location: 4113-4328 bp Feature: gene Location: 4491-4910 bp Feature: gene Location: 5482-7014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5893-6583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5893-6583 bp Feature: gene Location: 7070-7981 bp Feature: domain Description: SRAP Location: 7430-7946 bp Feature: domain Description: SRAP Location: 7430-7946 bp Feature: gene Location: 8677-9138 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SRAP (pfam02586)

Seq: MURZ01000049.1 Burkholderia cenocepacia strain VC7689 VC7689_contig-10000003, whole genome shotgun sequence (113080 bp)
Overview 1 RT 1: 7-5291 bp Neighborhood of RT #1 [7, 5305] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 7-306 bp Feature: gene Location: 615-1649 bp Feature: domain Description: COG3547 Location: 630-1593 bp Feature: domain Description: COG3 547 Location: 63 0-1593 bp Feature: gene Location: 1820-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153 -2768 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3029 bp Feature: domain Description: GIIM Note: maturase Location: 2828-3 029 bp Feature: gene Location: 3307-4272 bp Feature: domain Description: GDP_MD_SDR_e Location: 3343-4240 bp Feature: domain Description: GDP_MD_SDR_e Location: 3 3 43 -4240 bp Feature: gene Location: 4259-5305 bp Feature: domain Description: Gmd Location: 4274-5291 bp Feature: domain Description: Gmd Location: 4274-5291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089), COG3547 (Transposase )

Seq: MURZ01000066.1 Burkholderia cenocepacia strain VC7689 VC7689_contig-5, whole genome shotgun sequence (116761 bp)
Overview 1 RT 1: 45174-48923 bp Neighborhood of RT #1 [45174, 48994] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 45174-45929 bp Feature: domain Description: his_ut_repres Location: 45252-45924 bp Feature: domain Description: his_ut_repres Location: 4 5252-4 5924 bp Feature: gene Location: 46164-46736 bp Feature: domain Description: FIN Location: 46350-46701 bp Feature: domain Description: FIN Location: 4 6350-4 6701 bp Feature: gene Location: 46990-48339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47455-48091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 74 55-4 8091 bp Feature: gene Location: 48312-48518 bp Feature: gene Location: 48665-48994 bp Feature: domain Description: Histone_HNS Location: 48686-48923 bp Feature: domain Description: Histone_HNS Location: 4 8686-4 8923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MURZ01000134.1 Burkholderia cenocepacia strain VC7689 VC7689_contig-4000010, whole genome shotgun sequence (62918 bp)
Overview 1 RT 1: 56913-62595 bp Neighborhood of RT #1 [56913, 62753] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 56913-58331 bp Feature: domain Description: MFS_SV2_like Location: 57033-58284 bp Feature: domain Description: MFS_SV2_like Location: 5 7033-5 8284 bp Feature: gene Location: 58780-61242 bp Feature: domain Description: MscK Location: 58858-61201 bp Feature: domain Description: MscK Location: 5 885 8-61201 bp Feature: gene Location: 61386-62753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61719-62334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61719-62334 bp Feature: domain Description: GIIM Note: maturase Location: 62394-62595 bp Feature: domain Description: GIIM Note: maturase Location: 62394-625 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MURZ01000079.1 Burkholderia cenocepacia strain VC7689 VC7689_contig-3000006, whole genome shotgun sequence (31452 bp)
Overview 1 RT 1: 29117-31426 bp Neighborhood of RT #1 [29117, 31446] TnpB_IS66 RVT-GII PRK14702 Feature: gene Location: 29117-29449 bp Feature: domain Description: TnpB_IS66 Location: 29144-29432 bp Feature: domain Description: TnpB_IS6 6 Location: 29144-29432 bp Feature: gene Location: 29453-29775 bp Feature: gene Location: 29779-30714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30190-30706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30190-30706 bp Feature: gene Location: 30745-31446 bp Feature: domain Description: PRK14702 Location: 30748-31426 bp Feature: domain Description: PRK14702 Location: 30748-31426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK14702 (insertion element IS2 transposase InsD; Provisional)