myRT

myRT report for GCA_001992045.1_ASM199204v1

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Seq: MUSB01000065.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-3000007, whole genome shotgun sequence (33039 bp)
Overview 1 RT 1: 391-3933 bp Neighborhood of RT #1 [391, 3950] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 391-1164 bp Feature: domain Description: PRK09183 Location: 394-1156 bp Feature: domain Description: PRK091 83 Location: 394-1 1 56 bp Feature: gene Location: 1435-2322 bp Feature: domain Description: PRK09409 Location: 1438-2305 bp Feature: domain Description: PRK09409 Location: 1 438-2305 bp Feature: gene Location: 2353-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764-3280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764-3280 bp Feature: gene Location: 3292-3614 bp Feature: gene Location: 3618-3950 bp Feature: domain Description: TnpB_IS66 Location: 3645-3933 bp Feature: domain Description: TnpB_IS66 Location: 3645-3933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717), PRK09183 (transposase/IS protein; Provisional)

Seq: MUSB01000021.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-1000002, whole genome shotgun sequence (46322 bp)
Overview 1 RT 1: 1-2136 bp Neighborhood of RT #1 [1, 2136] RVT-GII Feature: gene Location: 1-683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 8-676 bp Feature: gene Location: 1339-1758 bp Feature: gene Location: 1921-2136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUSB01000106.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-12, whole genome shotgun sequence (107317 bp)
Overview 1 RT 1: 166-3637 bp Neighborhood of RT #1 [166, 3651] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1174-13 75 bp Feature: gene Location: 1653-2618 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: domain Description: GDP_MD_SDR_e Location: 1689-2586 bp Feature: gene Location: 2605-3651 bp Feature: domain Description: Gmd Location: 2620-3637 bp Feature: domain Description: Gmd Location: 2620-3 63 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), Gmd (COG1089)

Seq: MUSB01000020.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-2, whole genome shotgun sequence (71843 bp)
Overview 1 RT 1: 67293-71043 bp Neighborhood of RT #1 [67293, 71474] SRAP RVT-GII Feature: gene Location: 67293-68279 bp Feature: gene Location: 68975-69886 bp Feature: domain Description: SRAP Location: 69335-69851 bp Feature: domain Description: SRAP Location: 69335-69851 bp Feature: gene Location: 69942-71474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70353-71043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70353-7104 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUSB01000027.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-7000002, whole genome shotgun sequence (33263 bp)
Overview 1 RT 1: 29996-33018 bp Neighborhood of RT #1 [29996, 33176] COG3547 RVT-GII GIIM Feature: gene Location: 29996-30295 bp Feature: gene Location: 30604-31638 bp Feature: domain Description: COG3547 Location: 30619-31582 bp Feature: domain Description: COG35 47 Location: 30619-315 82 bp Feature: gene Location: 31809-33176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32142-32757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32142-3275 7 bp Feature: domain Description: GIIM Note: maturase Location: 32817-33018 bp Feature: domain Description: GIIM Note: maturase Location: 32817-33018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUSB01000062.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-7, whole genome shotgun sequence (116919 bp)
Overview 1 RT 1: 67916-71731 bp Neighborhood of RT #1 [67916, 71736] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 67916-68245 bp Feature: domain Description: Histone_HNS Location: 67937-68174 bp Feature: domain Description: Histone_HNS Location: 6 7937-6 8174 bp Feature: gene Location: 68392-68598 bp Feature: gene Location: 68571-69920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69036-69672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6 9036 -6 96 72 bp Feature: gene Location: 70174-70746 bp Feature: domain Description: FIN Location: 70360-70711 bp Feature: domain Description: FIN Location: 7036 0-70711 bp Feature: gene Location: 70981-71736 bp Feature: domain Description: his_ut_repres Location: 71059-71731 bp Feature: domain Description: his_ut_repres Location: 71059-71731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUSB01000119.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-5000013, whole genome shotgun sequence (63380 bp)
Overview 1 RT 1: 166-5959 bp Neighborhood of RT #1 [166, 6006] RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 166-1533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 499-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1174-1375 bp Feature: domain Description: GIIM Note: maturase Location: 117 4-137 5 bp Feature: gene Location: 1677-4139 bp Feature: domain Description: MscK Location: 1755-4098 bp Feature: domain Description: MscK Location: 17 55-4098 bp Feature: gene Location: 4588-6006 bp Feature: domain Description: MFS_SV2_like Location: 4708-5959 bp Feature: domain Description: MFS_SV2_like Location: 47 08-5959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUSB01000067.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-5000007, whole genome shotgun sequence (93019 bp)
Overview 1 RT 1: 89436-92219 bp Neighborhood of RT #1 [89436, 92650] D RVT-GII Feature: gene Location: 89436-90506 bp Feature: domain Description: D Location: 89490-90474 bp Feature: domain Description: D Location: 8 9490-90474 bp Feature: gene Location: 90694-90990 bp Feature: gene Location: 91118-92650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91529-92219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91529-92219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUSB01000096.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-5000010, whole genome shotgun sequence (19257 bp)
Overview 1 RT 1: 15975-19250 bp Neighborhood of RT #1 [15975, 19257] PolY_like COG4544 RVT-GII Feature: gene Location: 15975-17453 bp Feature: domain Description: PolY_like Location: 15993-16980 bp Feature: domain Description: PolY_like Location: 159 9 3-169 80 bp Feature: gene Location: 17374-18090 bp Feature: domain Description: COG4544 Location: 17479-17914 bp Feature: domain Description: COG4544 Location: 17479 -179 14 bp Feature: gene Location: 18575-19257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18902-19250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189 02-19 250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUSB01000047.1 Burkholderia cenocepacia strain VC7780 VC7780_contig-5, whole genome shotgun sequence (69016 bp)
Overview 1 RT 1: 45184-48933 bp Neighborhood of RT #1 [45184, 49004] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 45184-45939 bp Feature: domain Description: his_ut_repres Location: 45262-45934 bp Feature: domain Description: his_ut_repres Location: 45262-45934 bp Feature: gene Location: 46174-46746 bp Feature: domain Description: FIN Location: 46360-46711 bp Feature: domain Description: FIN Location: 46360-46711 bp Feature: gene Location: 47000-48349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47465-48101 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47465-4810 1 bp Feature: gene Location: 48322-48528 bp Feature: gene Location: 48675-49004 bp Feature: domain Description: Histone_HNS Location: 48696-48933 bp Feature: domain Description: Histone_HNS Location: 48696-48933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)