myRT

myRT report for GCA_001992075.1_ASM199207v1

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Seq: MUSD01000035.1 Burkholderia cenocepacia strain VC7986 VC7986_contig-9000003, whole genome shotgun sequence (74640 bp)
Overview 1 RT 1: 70337-73888 bp Neighborhood of RT #1 [70337, 73896] TnpB_IS66 RVT-GII PRK09409 PRK09183 Feature: gene Location: 70337-70669 bp Feature: domain Description: TnpB_IS66 Location: 70364-70652 bp Feature: domain Description: TnpB_IS66 Location: 70364-70652 bp Feature: gene Location: 70673-70995 bp Feature: gene Location: 70999-71973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71410-71929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 41 0-71 929 bp Feature: gene Location: 71965-72852 bp Feature: domain Description: PRK09409 Location: 71968-72835 bp Feature: domain Description: PRK09409 Location: 71 968-72835 bp Feature: gene Location: 73123-73896 bp Feature: domain Description: PRK09183 Location: 73126-73888 bp Feature: domain Description: PRK091 83 Location: 731 26-73888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09183 (transposase/IS protein; Provisional)

Seq: MUSD01000071.1 Burkholderia cenocepacia strain VC7986 VC7986_contig-1000009, whole genome shotgun sequence (47170 bp)
Overview 1 RT 1: 1-2897 bp Neighborhood of RT #1 [1, 2897] RVT-GII Feature: gene Location: 1-1528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 -1102 bp Feature: gene Location: 2100-2519 bp Feature: gene Location: 2682-2897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MUSD01000025.1 Burkholderia cenocepacia strain VC7986 VC7986_contig-14000002, whole genome shotgun sequence (168934 bp)
Overview 1 RT 1: 49079-52828 bp Neighborhood of RT #1 [49079, 52899] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49079-49834 bp Feature: domain Description: his_ut_repres Location: 49157-49829 bp Feature: domain Description: his_ut_repres Location: 49157-49829 bp Feature: gene Location: 50069-50641 bp Feature: domain Description: FIN Location: 50255-50606 bp Feature: domain Description: FIN Location: 50255-50606 bp Feature: gene Location: 50895-52244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51360-51996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 513 60-51996 bp Feature: gene Location: 52217-52423 bp Feature: gene Location: 52570-52899 bp Feature: domain Description: Histone_HNS Location: 52591-52828 bp Feature: domain Description: Histone_HNS Location: 52591-52828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUSD01000110.1 Burkholderia cenocepacia strain VC7986 VC7986_contig-5000013, whole genome shotgun sequence (21465 bp)
Overview 1 RT 1: 18080-21460 bp Neighborhood of RT #1 [18080, 21465] PolY_like COG4544 RVT-GII Feature: gene Location: 18080-19558 bp Feature: domain Description: PolY_like Location: 18098-19085 bp Feature: domain Description: PolY_like Location: 18098-19085 bp Feature: gene Location: 19479-20195 bp Feature: domain Description: COG4544 Location: 19584-20019 bp Feature: domain Description: COG4 54 4 Location: 19584 -20019 bp Feature: gene Location: 20596-21465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21007-21460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21007-214 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUSD01000069.1 Burkholderia cenocepacia strain VC7986 VC7986_contig-7000008, whole genome shotgun sequence (296988 bp)
Overview 1 RT 1: 30026-35310 bp Neighborhood of RT #1 [30026, 35324] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 30026-30325 bp Feature: gene Location: 30634-31668 bp Feature: domain Description: COG3547 Location: 30649-31612 bp Feature: domain Description: COG35 47 Location: 30649-31612 bp Feature: gene Location: 31839-33206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32172-32787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32172-32787 bp Feature: domain Description: GIIM Note: maturase Location: 32847-33048 bp Feature: domain Description: GIIM Note: maturase Location: 32847-33048 bp Feature: gene Location: 33326-34291 bp Feature: domain Description: GDP_MD_SDR_e Location: 33362-34259 bp Feature: domain Description: GDP_MD_SDR_e Location: 33362-3425 9 bp Feature: gene Location: 34278-35324 bp Feature: domain Description: Gmd Location: 34293-35310 bp Feature: domain Description: Gmd Location: 34293-35 310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUSD01000049.1 Burkholderia cenocepacia strain VC7986 VC7986_contig-6, whole genome shotgun sequence (71684 bp)
Overview 1 RT 1: 95-4276 bp Neighborhood of RT #1 [95, 4276] RVT-GII SRAP Feature: gene Location: 95-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506 -1196 bp Feature: gene Location: 1683-2594 bp Feature: domain Description: SRAP Location: 2043-2559 bp Feature: domain Description: SRAP Location: 2043-2559 bp Feature: gene Location: 3290-4276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUSD01000123.1 Burkholderia cenocepacia strain VC7986 VC7986_contig-1000015, whole genome shotgun sequence (64238 bp)
Overview 1 RT 1: 95-3277 bp Neighborhood of RT #1 [95, 3309] RVT-GII D Feature: gene Location: 95-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506-1196 bp Feature: gene Location: 1755-2051 bp Feature: gene Location: 2239-3309 bp Feature: domain Description: D Location: 2293-3277 bp Feature: domain Description: D Location: 2293-327 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII