myRT

myRT report for GCA_001992095.1_ASM199209v1

Download annotations/find similar RTs

Seq: MUSA01000092.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-8, whole genome shotgun sequence (202279 bp)
Overview 1 RT 1: 149654-153469 bp Neighborhood of RT #1 [149654, 153474] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 149654-149983 bp Feature: domain Description: Histone_HNS Location: 149675-149912 bp Feature: domain Description: Histone_HNS Location: 1 49675-1 4991 2 bp Feature: gene Location: 150130-150336 bp Feature: gene Location: 150309-151658 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 150774-151410 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 50774-1 51 41 0 bp Feature: gene Location: 151912-152484 bp Feature: domain Description: FIN Location: 152098-152449 bp Feature: domain Description: FIN Location: 1 52098-1 52449 bp Feature: gene Location: 152719-153474 bp Feature: domain Description: his_ut_repres Location: 152797-153469 bp Feature: domain Description: his_ut_repres Location: 1 52797-1 53469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUSA01000051.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-7000003, whole genome shotgun sequence (17763 bp)
Overview 1 RT 1: 14496-17518 bp Neighborhood of RT #1 [14496, 17676] COG3547 RVT-GII GIIM Feature: gene Location: 14496-14795 bp Feature: gene Location: 15104-16138 bp Feature: domain Description: COG3547 Location: 15119-16082 bp Feature: domain Description: COG3547 Location: 15119-16082 bp Feature: gene Location: 16309-17676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16642-17257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16642 -172 57 bp Feature: domain Description: GIIM Note: maturase Location: 17317-17518 bp Feature: domain Description: GIIM Note: maturase Location: 17317-17518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUSA01000112.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-4000010, whole genome shotgun sequence (21430 bp)
Overview 1 RT 1: 18054-21422 bp Neighborhood of RT #1 [18054, 21430] PolY_like COG4544 RVT-GII Feature: gene Location: 18054-19532 bp Feature: domain Description: PolY_like Location: 18072-19059 bp Feature: domain Description: PolY_like Location: 18072-19059 bp Feature: gene Location: 19453-20169 bp Feature: domain Description: COG4544 Location: 19558-19993 bp Feature: domain Description: COG4544 Location: 19558-19993 bp Feature: gene Location: 20570-21430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20981-21422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20981-21422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUSA01000164.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-3000015, whole genome shotgun sequence (62513 bp)
Overview 1 RT 1: 56508-62190 bp Neighborhood of RT #1 [56508, 62348] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 56508-57926 bp Feature: domain Description: MFS_SV2_like Location: 56628-57879 bp Feature: domain Description: MFS_SV2_like Location: 56628-57879 bp Feature: gene Location: 58375-60837 bp Feature: domain Description: MscK Location: 58453-60796 bp Feature: domain Description: MscK Location: 584 53-60796 bp Feature: gene Location: 60981-62348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61314-61929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61314 -61929 bp Feature: domain Description: GIIM Note: maturase Location: 61989-62190 bp Feature: domain Description: GIIM Note: maturase Location: 61989-62190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUSA01000070.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-6, whole genome shotgun sequence (105424 bp)
Overview 1 RT 1: 55309-60859 bp Neighborhood of RT #1 [55309, 60859] SRAP RVT-GII Feature: gene Location: 55309-56295 bp Feature: gene Location: 56991-57902 bp Feature: domain Description: SRAP Location: 57351-57867 bp Feature: domain Description: SRAP Location: 5 735 1-5 7867 bp Feature: gene Location: 57958-59490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58369-59059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 8369-5 905 9 bp Feature: gene Location: 60062-60481 bp Feature: gene Location: 60644-60859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUSA01000082.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-4000007, whole genome shotgun sequence (33684 bp)
Overview 1 RT 1: 1118-4660 bp Neighborhood of RT #1 [1118, 4677] PRK09183 PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 1118-1891 bp Feature: domain Description: PRK09183 Location: 1121-1883 bp Feature: domain Description: PRK09183 Location: 1121-1883 bp Feature: gene Location: 2162-3049 bp Feature: domain Description: PRK09409 Location: 2165-3032 bp Feature: domain Description: PRK09409 Location: 216 5-3032 bp Feature: gene Location: 3041-4015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-3971 bp Feature: gene Location: 4019-4341 bp Feature: gene Location: 4345-4677 bp Feature: domain Description: TnpB_IS66 Location: 4372-4660 bp Feature: domain Description: TnpB_IS6 6 Location: 4372-46 6 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, TnpB_IS66 (pfam05717)

Seq: MUSA01000133.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-12, whole genome shotgun sequence (129485 bp)
Overview 1 RT 1: 125835-129162 bp Neighborhood of RT #1 [125835, 129320] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 125835-126881 bp Feature: domain Description: Gmd Location: 125850-126867 bp Feature: domain Description: Gmd Location: 125850-126867 bp Feature: gene Location: 126868-127833 bp Feature: domain Description: GDP_MD_SDR_e Location: 126904-127801 bp Feature: domain Description: GDP_MD_SDR_e Location: 126904-127 801 bp Feature: gene Location: 127953-129320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128286-128901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128286-128901 bp Feature: domain Description: GIIM Note: maturase Location: 128961-129162 bp Feature: domain Description: GIIM Note: maturase Location: 128961-129162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUSA01000165.1 Burkholderia cenocepacia strain VC7779 VC7779_contig-4000015, whole genome shotgun sequence (89929 bp)
Overview 1 RT 1: 370-3552 bp Neighborhood of RT #1 [370, 3584] RVT-GII D Feature: gene Location: 370-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 781-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78 1-1471 bp Feature: gene Location: 2030-2326 bp Feature: gene Location: 2514-3584 bp Feature: domain Description: D Location: 2568-3552 bp Feature: domain Description: D Location: 2568 -3552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII