myRT

myRT report for GCA_001992115.1_ASM199211v1

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Seq: MUSC01000050.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-5, whole genome shotgun sequence (202756 bp)
Overview 1 RT 1: 49152-52901 bp Neighborhood of RT #1 [49152, 52972] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 49152-49907 bp Feature: domain Description: his_ut_repres Location: 49230-49902 bp Feature: domain Description: his_ut_repres Location: 49230-49902 bp Feature: gene Location: 50142-50714 bp Feature: domain Description: FIN Location: 50328-50679 bp Feature: domain Description: FIN Location: 50328-50679 bp Feature: gene Location: 50968-52317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51433-52069 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51 433-52069 bp Feature: gene Location: 52290-52496 bp Feature: gene Location: 52643-52972 bp Feature: domain Description: Histone_HNS Location: 52664-52901 bp Feature: domain Description: Histone_HNS Location: 52664-52901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUSC01000067.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-1000006, whole genome shotgun sequence (59585 bp)
Overview 1 RT 1: 55310-59060 bp Neighborhood of RT #1 [55310, 59491] SRAP RVT-GII Feature: gene Location: 55310-56296 bp Feature: gene Location: 56992-57903 bp Feature: domain Description: SRAP Location: 57352-57868 bp Feature: domain Description: SRAP Location: 57352 -57868 bp Feature: gene Location: 57959-59491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58370-59060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58370-59060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUSC01000150.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-4000015, whole genome shotgun sequence (292170 bp)
Overview 1 RT 1: 29937-35221 bp Neighborhood of RT #1 [29937, 35235] COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 29937-30236 bp Feature: gene Location: 30545-31579 bp Feature: domain Description: COG3547 Location: 30560-31523 bp Feature: domain Description: COG3 547 Location: 3 0560-3 1523 bp Feature: gene Location: 31750-33117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32083-32698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2083 -3 2698 bp Feature: domain Description: GIIM Note: maturase Location: 32758-32959 bp Feature: domain Description: GIIM Note: maturase Location: 3 2758-3 2959 bp Feature: gene Location: 33237-34202 bp Feature: domain Description: GDP_MD_SDR_e Location: 33273-34170 bp Feature: domain Description: GDP_MD_SDR_e Location: 3 3 273 -3 4170 bp Feature: gene Location: 34189-35235 bp Feature: domain Description: Gmd Location: 34204-35221 bp Feature: domain Description: Gmd Location: 3 4204-3 5221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: MUSC01000105.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-4000010, whole genome shotgun sequence (22236 bp)
Overview 1 RT 1: 18193-21810 bp Neighborhood of RT #1 [18193, 22236] PolY_like COG4544 RVT-GII Feature: gene Location: 18193-19671 bp Feature: domain Description: PolY_like Location: 18211-19198 bp Feature: domain Description: PolY_like Location: 18211-19198 bp Feature: gene Location: 19592-20308 bp Feature: domain Description: COG4544 Location: 19697-20132 bp Feature: domain Description: COG4 54 4 Location: 19697-20132 bp Feature: gene Location: 20709-22236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21120-21810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21120-21810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUSC01000042.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-11000003, whole genome shotgun sequence (296901 bp)
Overview 1 RT 1: 261667-266965 bp Neighborhood of RT #1 [261667, 266965] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 261667-262713 bp Feature: domain Description: Gmd Location: 261682-262699 bp Feature: domain Description: Gmd Location: 261682-262699 bp Feature: gene Location: 262700-263665 bp Feature: domain Description: GDP_MD_SDR_e Location: 262736-263633 bp Feature: domain Description: GDP_MD_SDR_e Location: 262736-263633 bp Feature: gene Location: 263785-265152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264118-264733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264118-264733 bp Feature: domain Description: GIIM Note: maturase Location: 264793-264994 bp Feature: domain Description: GIIM Note: maturase Location: 264793-264994 bp Feature: gene Location: 265323-266357 bp Feature: domain Description: COG3547 Location: 265338-266301 bp Feature: domain Description: COG35 47 Location: 265 338-266301 bp Feature: gene Location: 266666-266965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUSC01000090.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-1000008, whole genome shotgun sequence (63441 bp)
Overview 1 RT 1: 1-6324 bp Neighborhood of RT #1 [1, 6371] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 1-360 bp Feature: domain Description: COG3547 Location: 16-355 bp Feature: domain Description: COG3547 Location: 16 -355 bp Feature: gene Location: 531-1898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86 4-1479 bp Feature: domain Description: GIIM Note: maturase Location: 1539-1740 bp Feature: domain Description: GIIM Note: maturase Location: 1539-1740 bp Feature: gene Location: 2042-4504 bp Feature: domain Description: MscK Location: 2120-4463 bp Feature: domain Description: MscK Location: 2120-446 3 bp Feature: gene Location: 4953-6371 bp Feature: domain Description: MFS_SV2_like Location: 5073-6324 bp Feature: domain Description: MFS_SV2_like Location: 5073-6 324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), MscK (COG3264), MFS_SV2_like (cd17316), RVT-GII, GIIM (pfam08388)

Seq: MUSC01000072.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-6000006, whole genome shotgun sequence (17966 bp)
Overview 1 RT 1: 14862-17966 bp Neighborhood of RT #1 [14862, 17966] TnpB_IS66 RVT-GII PRK09409 Feature: gene Location: 14862-15194 bp Feature: domain Description: TnpB_IS66 Location: 14889-15177 bp Feature: domain Description: TnpB_IS66 Location: 14889-1517 7 bp Feature: gene Location: 15198-15520 bp Feature: gene Location: 15524-16498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15935-16454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15935-16454 bp Feature: gene Location: 16490-17377 bp Feature: domain Description: PRK09409 Location: 16493-17360 bp Feature: domain Description: PRK09409 Location: 16493-17 360 bp Feature: gene Location: 17648-17966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: MUSC01000145.1 Burkholderia cenocepacia strain VC7985 VC7985_contig-7000014, whole genome shotgun sequence (135477 bp)
Overview 1 RT 1: 44274-48825 bp Neighborhood of RT #1 [44274, 48857] RVT-GII D Feature: gene Location: 44274-44489 bp Feature: gene Location: 44652-45071 bp Feature: gene Location: 45643-47175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46054-46744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46054-46744 bp Feature: gene Location: 47303-47599 bp Feature: gene Location: 47787-48857 bp Feature: domain Description: D Location: 47841-48825 bp Feature: domain Description: D Location: 478 41-48 8 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, D (PHA02561)