myRT

myRT report for GCA_001992135.1_ASM199213v1

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Seq: MUSG01000041.1 Burkholderia cenocepacia strain VC7378 VC7378_contig-4000005, whole genome shotgun sequence (123988 bp)
Overview 1 RT 1: 114530-120137 bp Neighborhood of RT #1 [114530, 120259] YeaK PRK06498 RVT-GII GIIM EthD EthD SnoaL_4 Feature: gene Location: 114530-115051 bp Feature: domain Description: YeaK Location: 114551-115007 bp Feature: domain Description: YeaK Location: 1 1 4551 -1 1 5007 bp Feature: gene Location: 115458-117041 bp Feature: domain Description: PRK06498 Location: 115461-117039 bp Feature: domain Description: PRK06498 Location: 1 1 5461 -1 1 7039 bp Feature: gene Location: 117640-118881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117832-118450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7832-1 1 8450 bp Feature: domain Description: GIIM Note: maturase Location: 118501-118705 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 8501 -1 1 8705 bp Feature: gene Location: 118978-119694 bp Feature: domain Description: EthD Location: 119044-119230 bp Feature: domain Description: EthD Location: 1 1 9044-1 1 9230 bp Feature: domain Description: EthD Location: 119368-119641 bp Feature: domain Description: EthD Location: 1 1 9368-1 1 9641 bp Feature: gene Location: 119747-120259 bp Feature: domain Description: SnoaL_4 Location: 119768-120137 bp Feature: domain Description: SnoaL_4 Location: 1 1 9768-1 201 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaK (cd04336), PRK06498 (isocitrate lyase; Provisional), RVT-GII, GIIM (pfam08388), EthD (pfam07110), SnoaL_4 (pfam13577)

Seq: MUSG01000027.1 Burkholderia cenocepacia strain VC7378 VC7378_contig-4000003, whole genome shotgun sequence (60904 bp)
Overview 1 RT 1: 1-4072 bp Neighborhood of RT #1 [1, 4137] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 1-181 bp Feature: domain Description: COG3547 Location: 16-181 bp Feature: domain Description: COG3547 Location: 16-181 bp Feature: gene Location: 346-1743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-12 97 bp Feature: domain Description: GIIM Note: maturase Location: 1348-1558 bp Feature: domain Description: GIIM Note: maturase Location: 1348-1558 bp Feature: gene Location: 1833-2471 bp Feature: domain Description: AcrR Location: 1896-2457 bp Feature: domain Description: AcrR Location: 1896-2 457 bp Feature: gene Location: 2617-4137 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2659-4072 bp Feature: domain Description: MFS_MMR_MDR_like Location: 2 659-4072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), AcrR (COG1309), MFS_MMR_MDR_like (cd17504), RVT-GII, GIIM (pfam08388)

Seq: MUSG01000054.1 Burkholderia cenocepacia strain VC7378 VC7378_contig-3000007, whole genome shotgun sequence (163231 bp)
Overview 1 RT 1: 125388-129203 bp Neighborhood of RT #1 [125388, 129208] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125388-125717 bp Feature: domain Description: Histone_HNS Location: 125409-125646 bp Feature: domain Description: Histone_HNS Location: 125409-125646 bp Feature: gene Location: 125864-126070 bp Feature: gene Location: 126043-127392 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126508-127144 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126508-127144 bp Feature: gene Location: 127646-128218 bp Feature: domain Description: FIN Location: 127832-128183 bp Feature: domain Description: FIN Location: 12783 2-128183 bp Feature: gene Location: 128453-129208 bp Feature: domain Description: his_ut_repres Location: 128531-129203 bp Feature: domain Description: his_ut_repres Location: 12853 1-129203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)