myRT

myRT report for GCA_001992165.1_ASM199216v1

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Seq: MUWY01000095.1 Burkholderia cenocepacia strain VC7690 VC7690_contig-1000008, whole genome shotgun sequence (133053 bp)
Overview 1 RT 1: 111813-115628 bp Neighborhood of RT #1 [111813, 115633] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 111813-112142 bp Feature: domain Description: Histone_HNS Location: 111834-112071 bp Feature: domain Description: Histone_HNS Location: 1 1 1 834-1 1 2071 bp Feature: gene Location: 112289-112495 bp Feature: gene Location: 112468-113817 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112933-113569 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 2933-1 1 3569 bp Feature: gene Location: 114071-114643 bp Feature: domain Description: FIN Location: 114257-114608 bp Feature: domain Description: FIN Location: 1 1 4257-1 1 4608 bp Feature: gene Location: 114878-115633 bp Feature: domain Description: his_ut_repres Location: 114956-115628 bp Feature: domain Description: his_ut_repres Location: 1 1 4956-1 1 5628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUWY01000005.1 Burkholderia cenocepacia strain VC7690 VC7690_contig-4000000, whole genome shotgun sequence (92522 bp)
Overview 1 RT 1: 51600-56183 bp Neighborhood of RT #1 [51600, 56183] D RVT-GII Feature: gene Location: 51600-52670 bp Feature: domain Description: D Location: 51654-52638 bp Feature: domain Description: D Location: 51654-52 638 bp Feature: gene Location: 52858-53154 bp Feature: gene Location: 53282-54814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53693-54383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53693-54383 bp Feature: gene Location: 55386-55805 bp Feature: gene Location: 55968-56183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII

Seq: MUWY01000032.1 Burkholderia cenocepacia strain VC7690 VC7690_contig-9000002, whole genome shotgun sequence (78990 bp)
Overview 1 RT 1: 14831-22437 bp Neighborhood of RT #1 [14831, 22484] COG3547 RVT-GII GIIM MscK MFS_SV2_like Feature: gene Location: 14831-15130 bp Feature: gene Location: 15439-16473 bp Feature: domain Description: COG3547 Location: 15454-16417 bp Feature: domain Description: COG3 547 Location: 15454-16417 bp Feature: gene Location: 16644-18011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16977-17592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16977-17592 bp Feature: domain Description: GIIM Note: maturase Location: 17652-17853 bp Feature: domain Description: GIIM Note: maturase Location: 17652-17853 bp Feature: gene Location: 18155-20617 bp Feature: domain Description: MscK Location: 18233-20576 bp Feature: domain Description: MscK Location: 1823 3 -20576 bp Feature: gene Location: 21066-22484 bp Feature: domain Description: MFS_SV2_like Location: 21186-22437 bp Feature: domain Description: MFS_SV2_like Location: 21186-2243 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264), MFS_SV2_like (cd17316)

Seq: MUWY01000079.1 Burkholderia cenocepacia strain VC7690 VC7690_contig-7, whole genome shotgun sequence (57740 bp)
Overview 1 RT 1: 53465-57215 bp Neighborhood of RT #1 [53465, 57646] SRAP RVT-GII Feature: gene Location: 53465-54451 bp Feature: gene Location: 55147-56058 bp Feature: domain Description: SRAP Location: 55507-56023 bp Feature: domain Description: SRAP Location: 55507-56023 bp Feature: gene Location: 56114-57646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56525-57215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56525-57215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), RVT-GII

Seq: MUWY01000150.1 Burkholderia cenocepacia strain VC7690 VC7690_contig-4000013, whole genome shotgun sequence (22011 bp)
Overview 1 RT 1: 17968-21585 bp Neighborhood of RT #1 [17968, 22011] PolY_like COG4544 RVT-GII Feature: gene Location: 17968-19446 bp Feature: domain Description: PolY_like Location: 17986-18973 bp Feature: domain Description: PolY_like Location: 17986-18973 bp Feature: gene Location: 19367-20083 bp Feature: domain Description: COG4544 Location: 19472-19907 bp Feature: domain Description: COG45 44 Location: 19472-19907 bp Feature: gene Location: 20484-22011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20895-21585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20895 -215 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII

Seq: MUWY01000086.1 Burkholderia cenocepacia strain VC7690 VC7690_contig-7000007, whole genome shotgun sequence (29565 bp)
Overview 1 RT 1: 205-2703 bp Neighborhood of RT #1 [205, 2720] PRK09409 RVT-GII TnpB_IS66 Feature: gene Location: 205-1092 bp Feature: domain Description: PRK09409 Location: 208-1075 bp Feature: domain Description: PRK09409 Location: 208-1075 bp Feature: gene Location: 1123-2058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534-2050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534-2050 bp Feature: gene Location: 2062-2384 bp Feature: gene Location: 2388-2720 bp Feature: domain Description: TnpB_IS66 Location: 2415-2703 bp Feature: domain Description: TnpB_IS6 6 Location: 2415-2703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), TnpB_IS66 (pfam05717)