myRT

myRT report for GCA_001992225.1_ASM199222v1

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Seq: MUST01000059.1 Burkholderia cenocepacia strain VC6666 VC6666_contig-9000005, whole genome shotgun sequence (42773 bp)
Overview 1 RT 1: 2645-7253 bp Neighborhood of RT #1 [2645, 7261] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 2645-2839 bp Feature: gene Location: 3219-4253 bp Ori: ONU24633.1 Feature: domain Description: COG3547 Location: 3234-4197 bp Feature: domain Description: COG3547 Location: 3234-41 97 bp Feature: gene Location: 4424-5791 bp Ori: ONU24634.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4757-5372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4757-5372 bp Feature: domain Description: GIIM Note: maturase Location: 5432-5633 bp Feature: domain Description: GIIM Note: maturase Location: 5432-5633 bp Feature: gene Location: 5899-6786 bp Ori: ONU24635.1 Feature: domain Description: RsmI Location: 5947-6760 bp Feature: domain Description: RsmI Location: 5947-6760 bp Feature: gene Location: 6785-7261 bp Ori: ONU24636.1 Feature: domain Description: PRK14673 Location: 6836-7253 bp Feature: domain Description: PRK1 4673 Location: 6836-7253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUST01000034.1 Burkholderia cenocepacia strain VC6666 VC6666_contig-2000003, whole genome shotgun sequence (141329 bp)
Overview 1 RT 1: 11961-15710 bp Neighborhood of RT #1 [11961, 15781] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 11961-12716 bp Ori: ONU27998.1 Feature: domain Description: his_ut_repres Location: 12039-12711 bp Feature: domain Description: his_ut_repres Location: 12 039-12 711 bp Feature: gene Location: 12951-13523 bp Ori: ONU27999.1 Feature: domain Description: FIN Location: 13137-13488 bp Feature: domain Description: FIN Location: 13137-13488 bp Feature: gene Location: 13777-15126 bp Ori: ONU28000.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14242-14878 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142 42 -14878 bp Feature: gene Location: 15099-15305 bp Feature: gene Location: 15452-15781 bp Ori: ONU28002.1 Feature: domain Description: Histone_HNS Location: 15473-15710 bp Feature: domain Description: Histone_HNS Location: 15473-15710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUST01000044.1 Burkholderia cenocepacia strain VC6666 VC6666_contig-3000004, whole genome shotgun sequence (143613 bp)
Overview 1 RT 1: 109766-114178 bp Neighborhood of RT #1 [109766, 114178] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 109766-110230 bp Ori: ONU26416.1 Feature: domain Description: DUF1566 Location: 110027-110207 bp Feature: domain Description: DUF1566 Location: 110027-110207 bp Feature: gene Location: 110245-110601 bp Ori: ONU26417.1 Feature: domain Description: Avd_like Location: 110272-110578 bp Feature: domain Description: Avd_like Location: 110272-110578 bp Feature: gene Location: 110945-111943 bp Ori: ONU26418.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111038-111725 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11103 8-111725 bp Feature: gene Location: 112002-113903 bp Ori: ONU26462.1 Feature: domain Description: Dcm Location: 112035-112641 bp Feature: domain Description: Dcm Location: 11203 5-112641 bp Feature: domain Description: Dcm Location: 113640-113799 bp Feature: domain Description: Dcm Location: 113 640-113 799 bp Feature: gene Location: 113918-114178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: MUST01000030.1 Burkholderia cenocepacia strain VC6666 VC6666_contig-8000002, whole genome shotgun sequence (53997 bp)
Overview 1 RT 1: 46179-53995 bp Neighborhood of RT #1 [46179, 53997] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf COG3547 Feature: gene Location: 46179-46844 bp Feature: domain Description: GIIM Note: maturase Location: 46182-46407 bp Feature: domain Description: GIIM Note: maturase Location: 4 6182-4 64 07 bp Feature: domain Description: HNHc Note: nucleases Location: 46641-46797 bp Feature: domain Description: HNHc Note: nucleases Location: 4 664 1-4 6797 bp Feature: gene Location: 46990-49905 bp Ori: ONU28746.1 Feature: domain Description: DUF4158 Location: 47029-47494 bp Feature: domain Description: DUF4 158 Location: 4 7029-4 74 94 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 48682-49828 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4 8682-4 9828 bp Feature: gene Location: 50036-51106 bp Feature: domain Description: RVT_N Location: 50093-50330 bp Feature: domain Description: RVT_N Location: 50093-50330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50381-51032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50381-51032 bp Feature: gene Location: 51702-52757 bp Ori: ONU28747.1 Feature: domain Description: DEXHc_Snf Location: 51921-52176 bp Feature: domain Description: DEXHc_Snf Location: 51921-52176 bp Feature: gene Location: 53092-53997 bp Ori: ONU28748.1 Feature: domain Description: COG3547 Location: 53116-53995 bp Feature: domain Description: COG354 7 Location: 53116-53995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), COG3547 (Transposase )

Seq: MUST01000032.1 Burkholderia cenocepacia strain VC6666 VC6666_contig-3, whole genome shotgun sequence (95921 bp)
Overview 1 RT 1: 90527-95856 bp Neighborhood of RT #1 [90527, 95921] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 90527-91216 bp Feature: gene Location: 91468-93483 bp Ori: ONU28538.1 Feature: domain Description: HATPase_c_3 Location: 91537-91861 bp Feature: domain Description: HATPase_c_3 Location: 915 37-91861 bp Feature: gene Location: 94011-95465 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94020-94494 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 94020-94494 bp Feature: gene Location: 95514-95921 bp Ori: ONU28551.1 Feature: domain Description: rve_3 Location: 95658-95856 bp Feature: domain Description: rve_3 Location: 95 65 8-95 85 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)