myRT

myRT report for GCA_001992255.1_ASM199225v1

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Seq: MUSW01000039.1 Burkholderia cenocepacia strain VC8381 VC8381_contig-1000004, whole genome shotgun sequence (46659 bp)
Overview 1 RT 1: 1-5223 bp Neighborhood of RT #1 [1, 5223] RVT-UG5 HATPase_c_3 Feature: gene Location: 1-236 bp Feature: gene Location: 285-1739 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 294-768 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 294-768 bp Feature: gene Location: 2267-4282 bp Ori: ONU03382.1 Feature: domain Description: HATPase_c_3 Location: 2336-2660 bp Feature: domain Description: HATPase_c_3 Location: 2336-2660 bp Feature: gene Location: 4534-5223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, HATPase_c_3 (pfam13589)

Seq: MUSW01000063.1 Burkholderia cenocepacia strain VC8381 VC8381_contig-9000005, whole genome shotgun sequence (11298 bp)
Overview 1 RT 1: 8065-11053 bp Neighborhood of RT #1 [8065, 11211] COG3547 RVT-GII GIIM Feature: gene Location: 8065-8259 bp Feature: gene Location: 8639-9673 bp Ori: ONU00593.1 Feature: domain Description: COG3547 Location: 8654-9617 bp Feature: domain Description: COG3547 Location: 8654-9617 bp Feature: gene Location: 9844-11211 bp Ori: ONU00594.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10177-10792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10177-10792 bp Feature: domain Description: GIIM Note: maturase Location: 10852-11053 bp Feature: domain Description: GIIM Note: maturase Location: 10852 -11053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUSW01000104.1 Burkholderia cenocepacia strain VC8381 VC8381_contig-12000009, whole genome shotgun sequence (232114 bp)
Overview 1 RT 1: 29436-33825 bp Neighborhood of RT #1 [29436, 33848] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29436-29696 bp Feature: gene Location: 29711-31612 bp Ori: ONT95524.1 Feature: domain Description: Dcm Location: 29744-30350 bp Feature: domain Description: Dcm Location: 29744-3 03 50 bp Feature: domain Description: Dcm Location: 31349-31508 bp Feature: domain Description: Dcm Location: 3 13 49-3 1508 bp Feature: gene Location: 31671-32669 bp Ori: ONT95525.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31764-32451 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 1764-3 2451 bp Feature: gene Location: 33013-33369 bp Ori: ONT95526.1 Feature: domain Description: Avd_like Location: 33040-33346 bp Feature: domain Description: Avd_like Location: 3 3 040-3 3 3 46 bp Feature: gene Location: 33384-33848 bp Ori: ONT95527.1 Feature: domain Description: DUF1566 Location: 33645-33825 bp Feature: domain Description: DUF1566 Location: 3 3 645-3 3 825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUSW01000057.1 Burkholderia cenocepacia strain VC8381 VC8381_contig-3000005, whole genome shotgun sequence (141690 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Ori: ONU01044.1 Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 124 00-13072 bp Feature: gene Location: 13312-13884 bp Ori: ONU01045.1 Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 134 98-1384 9 bp Feature: gene Location: 14138-15487 bp Ori: ONU01046.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 603-15239 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Ori: ONU01048.1 Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 15834 -16071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUSW01000072.1 Burkholderia cenocepacia strain VC8381 VC8381_contig-8000006, whole genome shotgun sequence (134166 bp)
Overview 1 RT 1: 127053-134158 bp Neighborhood of RT #1 [127053, 134166] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf DEDD_Tnp_IS110 Feature: gene Location: 127053-127718 bp Feature: domain Description: GIIM Note: maturase Location: 127056-127281 bp Feature: domain Description: GIIM Note: maturase Location: 12705 6-127281 bp Feature: domain Description: HNHc Note: nucleases Location: 127515-127671 bp Feature: domain Description: HNHc Note: nucleases Location: 1275 15 -127671 bp Feature: gene Location: 127864-130779 bp Ori: ONT99742.1 Feature: domain Description: DUF4158 Location: 127903-128368 bp Feature: domain Description: DUF415 8 Location: 127903-128368 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 129556-130702 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1295 5 6-130702 bp Feature: gene Location: 130910-131980 bp Feature: domain Description: RVT_N Location: 130967-131204 bp Feature: domain Description: RVT_N Location: 130967-131204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131255-131906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13125 5 -131906 bp Feature: gene Location: 132576-133631 bp Ori: ONT99743.1 Feature: domain Description: DEXHc_Snf Location: 132795-133050 bp Feature: domain Description: DEXHc_Snf Location: 132795 -13305 0 bp Feature: gene Location: 133966-134166 bp Ori: ONT99744.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 133993-134158 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 133993-13415 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), DEDD_Tnp_IS110 (pfam01548)