myRT

myRT report for GCA_001992275.1_ASM199227v1

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Seq: MUSZ01000027.1 Burkholderia cenocepacia strain VC10925 VC10925_contig-6000004, whole genome shotgun sequence (218207 bp)
Overview 1 RT 1: 103999-108388 bp Neighborhood of RT #1 [103999, 108411] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 103999-104259 bp Feature: gene Location: 104274-106175 bp Ori: ONU11771.1 Feature: domain Description: Dcm Location: 104307-104913 bp Feature: domain Description: Dcm Location: 1 04307-1 0491 3 bp Feature: domain Description: Dcm Location: 105912-106071 bp Feature: domain Description: Dcm Location: 1 0591 2-1 06071 bp Feature: gene Location: 106234-107232 bp Ori: ONU11772.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 106327-107014 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 06327-1 0701 4 bp Feature: gene Location: 107576-107932 bp Ori: ONU11773.1 Feature: domain Description: Avd_like Location: 107603-107909 bp Feature: domain Description: Avd_like Location: 1 07603-1 07909 bp Feature: gene Location: 107947-108411 bp Ori: ONU11774.1 Feature: domain Description: DUF1566 Location: 108208-108388 bp Feature: domain Description: DUF1 566 Location: 1 08208-1 08388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUSZ01000065.1 Burkholderia cenocepacia strain VC10925 VC10925_contig-3000009, whole genome shotgun sequence (11171 bp)
Overview 1 RT 1: 3445-11168 bp Neighborhood of RT #1 [3445, 11171] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf COG3547 Feature: gene Location: 3445-4110 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: gene Location: 4256-7171 bp Ori: ONU05996.1 Feature: domain Description: DUF4158 Location: 4295-4760 bp Feature: domain Description: DUF4158 Location: 42 95-4760 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: gene Location: 7302-8372 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-82 98 bp Feature: gene Location: 8968-10023 bp Ori: ONU05997.1 Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: gene Location: 10358-11171 bp Ori: ONU05998.1 Feature: domain Description: COG3547 Location: 10382-11168 bp Feature: domain Description: COG3547 Location: 10382 -11168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), COG3547 (Transposase )

Seq: MUSZ01000077.1 Burkholderia cenocepacia strain VC10925 VC10925_contig-1000011, whole genome shotgun sequence (29063 bp)
Overview 1 RT 1: 25299-28998 bp Neighborhood of RT #1 [25299, 29054] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 25299-25814 bp Ori: ONU04032.1 Feature: domain Description: PRK12511 Location: 25311-25806 bp Feature: domain Description: PRK12511 Location: 253 11-25806 bp Feature: gene Location: 25842-26201 bp Ori: ONU04033.1 Feature: domain Description: COG4315 Location: 25863-26199 bp Feature: domain Description: COG43 15 Location: 25863 -26199 bp Feature: gene Location: 26482-27849 bp Ori: ONU04034.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26815-27430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26815-2743 0 bp Feature: domain Description: GIIM Note: maturase Location: 27490-27691 bp Feature: domain Description: GIIM Note: maturase Location: 27490-27691 bp Feature: gene Location: 28020-29054 bp Ori: ONU04035.1 Feature: domain Description: COG3547 Location: 28035-28998 bp Feature: domain Description: COG3 547 Location: 2803 5-28998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUSZ01000036.1 Burkholderia cenocepacia strain VC10925 VC10925_contig-8000005, whole genome shotgun sequence (4669 bp)
Overview 1 RT 1: 1436-4424 bp Neighborhood of RT #1 [1436, 4582] COG3547 RVT-GII GIIM Feature: gene Location: 1436-1630 bp Feature: gene Location: 2010-3044 bp Ori: ONU10621.1 Feature: domain Description: COG3547 Location: 2025-2988 bp Feature: domain Description: COG354 7 Location: 2025-2988 bp Feature: gene Location: 3215-4582 bp Ori: ONU10622.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3548-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354 8-4 163 bp Feature: domain Description: GIIM Note: maturase Location: 4223-4424 bp Feature: domain Description: GIIM Note: maturase Location: 4 223-4 4 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUSZ01000047.1 Burkholderia cenocepacia strain VC10925 VC10925_contig-9000006, whole genome shotgun sequence (67498 bp)
Overview 1 RT 1: 1-5428 bp Neighborhood of RT #1 [1, 5428] Tra5 RVT-UG5 HATPase_c_3 Feature: gene Location: 1-441 bp Ori: ONU09556.1 Feature: domain Description: Tra5 Location: 4-409 bp Feature: domain Description: Tra5 Location: 4-409 bp Feature: gene Location: 490-1944 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 499-973 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 499-973 bp Feature: gene Location: 2472-4487 bp Ori: ONU09557.1 Feature: domain Description: HATPase_c_3 Location: 2541-2865 bp Feature: domain Description: HATPase_c_3 Location: 25 41-2865 bp Feature: gene Location: 4739-5428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-UG5, HATPase_c_3 (pfam13589)