myRT

myRT report for GCA_001992285.1_ASM199228v1

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Seq: MUSX01000120.1 Burkholderia cenocepacia strain VC9478 VC9478_contig-5000012, whole genome shotgun sequence (83871 bp)
Overview 1 RT 1: 61069-64818 bp Neighborhood of RT #1 [61069, 64889] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 61069-61824 bp Feature: domain Description: his_ut_repres Location: 61147-61819 bp Feature: domain Description: his_ut_repres Location: 61 1 47-61 81 9 bp Feature: gene Location: 62059-62631 bp Feature: domain Description: FIN Location: 62245-62596 bp Feature: domain Description: FIN Location: 62245-62596 bp Feature: gene Location: 62885-64234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63350-63986 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63350-63986 bp Feature: gene Location: 64207-64413 bp Feature: gene Location: 64560-64889 bp Feature: domain Description: Histone_HNS Location: 64581-64818 bp Feature: domain Description: Histone_HNS Location: 64581 -6481 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUSX01000037.1 Burkholderia cenocepacia strain VC9478 VC9478_contig-1000004, whole genome shotgun sequence (69184 bp)
Overview 1 RT 1: 65511-69180 bp Neighborhood of RT #1 [65511, 69184] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 65511-66026 bp Feature: domain Description: PRK12511 Location: 65523-66018 bp Feature: domain Description: PRK12 511 Location: 6552 3-66018 bp Feature: gene Location: 66054-66413 bp Feature: domain Description: COG4315 Location: 66075-66411 bp Feature: domain Description: COG4315 Location: 66075-66411 bp Feature: gene Location: 66694-68061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67027-67642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6702 7-67642 bp Feature: domain Description: GIIM Note: maturase Location: 67702-67903 bp Feature: domain Description: GIIM Note: maturase Location: 67702 -67903 bp Feature: gene Location: 68232-69184 bp Feature: domain Description: COG3547 Location: 68247-69180 bp Feature: domain Description: COG3547 Location: 682 47-69180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUSX01000059.1 Burkholderia cenocepacia strain VC9478 VC9478_contig-5000005, whole genome shotgun sequence (7644 bp)
Overview 1 RT 1: 1439-6047 bp Neighborhood of RT #1 [1439, 6055] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG3 547 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 551-4166 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: gene Location: 4693-5580 bp Feature: domain Description: RsmI Location: 4741-5554 bp Feature: domain Description: RsmI Location: 4741-5554 bp Feature: gene Location: 5579-6055 bp Feature: domain Description: PRK14673 Location: 5630-6047 bp Feature: domain Description: PRK14673 Location: 563 0-6047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUSX01000109.1 Burkholderia cenocepacia strain VC9478 VC9478_contig-2000011, whole genome shotgun sequence (10514 bp)
Overview 1 RT 1: 3446-9443 bp Neighborhood of RT #1 [3446, 10024] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 3446-4111 bp Feature: domain Description: GIIM Note: maturase Location: 3449-3674 bp Feature: domain Description: GIIM Note: maturase Location: 34 4 9-3674 bp Feature: domain Description: HNHc Note: nucleases Location: 3908-4064 bp Feature: domain Description: HNHc Note: nucleases Location: 3908-4 064 bp Feature: gene Location: 4257-7172 bp Feature: domain Description: DUF4158 Location: 4296-4761 bp Feature: domain Description: DUF4 158 Location: 4 296-4 761 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5949-7095 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 594 9-7095 bp Feature: gene Location: 7303-8373 bp Feature: RT Description: RVT_N Location: 7360-7597 bp Feature: RT Description: RVT_N Location: 7360-7597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7648-8299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764 8-8299 bp Feature: gene Location: 8969-10024 bp Feature: domain Description: DEXHc_Snf Location: 9188-9443 bp Feature: domain Description: DEXHc_Snf Location: 9188-94 4 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)

Seq: MUSX01000076.1 Burkholderia cenocepacia strain VC9478 VC9478_contig-6000007, whole genome shotgun sequence (305914 bp)
Overview 1 RT 1: 272717-277129 bp Neighborhood of RT #1 [272717, 277129] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 272717-273181 bp Feature: domain Description: DUF1566 Location: 272978-273158 bp Feature: domain Description: DUF15 66 Location: 272978-27315 8 bp Feature: gene Location: 273196-273552 bp Feature: domain Description: Avd_like Location: 273223-273529 bp Feature: domain Description: Avd_like Location: 273223-2735 29 bp Feature: gene Location: 273896-274894 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 273989-274676 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 273989-274676 bp Feature: gene Location: 274953-276854 bp Feature: domain Description: Dcm Location: 274986-275592 bp Feature: domain Description: Dcm Location: 274986-275 5 92 bp Feature: domain Description: Dcm Location: 276591-276750 bp Feature: domain Description: Dcm Location: 2765 91-27675 0 bp Feature: gene Location: 276869-277129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)