myRT

myRT report for GCA_001992335.1_ASM199233v1

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Seq: MUTE01000085.1 Burkholderia cenocepacia strain VC10394 VC10394_contig-2000010, whole genome shotgun sequence (7690 bp)
Overview 1 RT 1: 10-4935 bp Neighborhood of RT #1 [10, 5000] COG3547 RVT-GII GIIM AcrR MFS_MMR_MDR_like Feature: gene Location: 10-1044 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3547 Location: 25-988 bp Feature: gene Location: 1209-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542-2160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 542-21 60 bp Feature: domain Description: GIIM Note: maturase Location: 2211-2421 bp Feature: domain Description: GIIM Note: maturase Location: 221 1 -2421 bp Feature: gene Location: 2696-3334 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: domain Description: AcrR Location: 2759-3320 bp Feature: gene Location: 3480-5000 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Feature: domain Description: MFS_MMR_MDR_like Location: 3522-4935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), AcrR (COG1309), MFS_MMR_MDR_like (cd17504)

Seq: MUTE01000034.1 Burkholderia cenocepacia strain VC10394 VC10394_contig-8000004, whole genome shotgun sequence (399900 bp)
Overview 1 RT 1: 256658-260473 bp Neighborhood of RT #1 [256658, 260478] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 256658-256987 bp Feature: domain Description: Histone_HNS Location: 256679-256916 bp Feature: domain Description: Histone_HNS Location: 2 56679-2 56916 bp Feature: gene Location: 257134-257340 bp Feature: gene Location: 257313-258662 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 257778-258414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 57778-2 58414 bp Feature: gene Location: 258916-259488 bp Feature: domain Description: FIN Location: 259102-259453 bp Feature: domain Description: FIN Location: 2 59102 -2 59453 bp Feature: gene Location: 259723-260478 bp Feature: domain Description: his_ut_repres Location: 259801-260473 bp Feature: domain Description: his_ut_repres Location: 2 59801-2 60473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUTE01000116.1 Burkholderia cenocepacia strain VC10394 VC10394_contig-2000015, whole genome shotgun sequence (124005 bp)
Overview 1 RT 1: 3725-9410 bp Neighborhood of RT #1 [3725, 9454] SnoaL_4 EthD EthD RVT-GII GIIM PRK06498 YeaK Feature: gene Location: 3725-4237 bp Feature: domain Description: SnoaL_4 Location: 3746-4115 bp Feature: domain Description: SnoaL_4 Location: 3 746-4115 bp Feature: gene Location: 4290-5006 bp Feature: domain Description: EthD Location: 4356-4542 bp Feature: domain Description: EthD Location: 43 56-4542 bp Feature: domain Description: EthD Location: 4680-4953 bp Feature: domain Description: EthD Location: 4680-4953 bp Feature: gene Location: 5103-6344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5295-5913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5295-5913 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6168 bp Feature: domain Description: GIIM Note: maturase Location: 5964-6168 bp Feature: gene Location: 6943-8526 bp Feature: domain Description: PRK06498 Location: 6946-8524 bp Feature: domain Description: PRK06498 Location: 6946-8524 bp Feature: gene Location: 8933-9454 bp Feature: domain Description: YeaK Location: 8954-9410 bp Feature: domain Description: YeaK Location: 8954-9410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SnoaL_4 (pfam13577), EthD (pfam07110), RVT-GII, GIIM (pfam08388), PRK06498 (isocitrate lyase; Provisional), YeaK (cd04336)