myRT

myRT report for GCA_001992565.1_ASM199256v1

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Seq: MUSU01000062.1 Burkholderia cenocepacia strain VC7559 VC7559_contig-12000005, whole genome shotgun sequence (42004 bp)
Overview 1 RT 1: 1439-6047 bp Neighborhood of RT #1 [1439, 6055] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Ori: ONU14712.1 Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Ori: ONU14713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551 -41 66 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: gene Location: 4693-5580 bp Ori: ONU14714.1 Feature: domain Description: RsmI Location: 4741-5554 bp Feature: domain Description: RsmI Location: 4741 -5554 bp Feature: gene Location: 5579-6055 bp Ori: ONU14715.1 Feature: domain Description: PRK14673 Location: 5630-6047 bp Feature: domain Description: PRK1 4673 Location: 5630-6047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)

Seq: MUSU01000092.1 Burkholderia cenocepacia strain VC7559 VC7559_contig-6000009, whole genome shotgun sequence (11344 bp)
Overview 1 RT 1: 3445-11318 bp Neighborhood of RT #1 [3445, 11323] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf COG3547 Feature: gene Location: 3445-4110 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: GIIM Note: maturase Location: 3448-3673 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: domain Description: HNHc Note: nucleases Location: 3907-4063 bp Feature: gene Location: 4256-7171 bp Ori: ONU10616.1 Feature: domain Description: DUF4158 Location: 4295-4760 bp Feature: domain Description: DUF4158 Location: 42 95-4760 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5948-7094 bp Feature: gene Location: 7302-8372 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: domain Description: RVT_N Location: 7359-7596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-8298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7647-82 98 bp Feature: gene Location: 8968-10023 bp Ori: ONU10617.1 Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: domain Description: DEXHc_Snf Location: 9187-9442 bp Feature: gene Location: 10358-11323 bp Ori: ONU10618.1 Feature: domain Description: COG3547 Location: 10382-11318 bp Feature: domain Description: COG3547 Location: 10382 -11318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), COG3547 (Transposase )

Seq: MUSU01000078.1 Burkholderia cenocepacia strain VC7559 VC7559_contig-1000008, whole genome shotgun sequence (30168 bp)
Overview 1 RT 1: 10-3757 bp Neighborhood of RT #1 [10, 3765] COG3547 RVT-GII GIIM COG4315 PRK12511 Feature: gene Location: 10-1044 bp Ori: ONU11948.1 Feature: domain Description: COG3547 Location: 25-988 bp Feature: domain Description: COG3 547 Location: 25-988 bp Feature: gene Location: 1215-2582 bp Ori: ONU11949.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1548-2163 bp Feature: domain Description: GIIM Note: maturase Location: 2223-2424 bp Feature: domain Description: GIIM Note: maturase Location: 2223 -2424 bp Feature: gene Location: 2863-3222 bp Ori: ONU11950.1 Feature: domain Description: COG4315 Location: 2884-3220 bp Feature: domain Description: COG43 15 Location: 2884-3 220 bp Feature: gene Location: 3250-3765 bp Ori: ONU11951.1 Feature: domain Description: PRK12511 Location: 3262-3757 bp Feature: domain Description: PRK12511 Location: 3 262-3 757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: MUSU01000080.1 Burkholderia cenocepacia strain VC7559 VC7559_contig-3000008, whole genome shotgun sequence (46816 bp)
Overview 1 RT 1: 41422-46751 bp Neighborhood of RT #1 [41422, 46816] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 41422-42111 bp Feature: gene Location: 42363-44378 bp Ori: ONU11585.1 Feature: domain Description: HATPase_c_3 Location: 42432-42756 bp Feature: domain Description: HATPase_c_3 Location: 4 24 32-4 2756 bp Feature: gene Location: 44906-46360 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44915-45389 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 4 915-4 5389 bp Feature: gene Location: 46409-46816 bp Ori: ONU11588.1 Feature: domain Description: rve_3 Location: 46553-46751 bp Feature: domain Description: rve_3 Location: 4 6553-4 6751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUSU01000077.1 Burkholderia cenocepacia strain VC7559 VC7559_contig-8, whole genome shotgun sequence (267357 bp)
Overview 1 RT 1: 12322-16071 bp Neighborhood of RT #1 [12322, 16142] his_ut_repres FIN RVT-Retrons Histone_HNS Feature: gene Location: 12322-13077 bp Ori: ONU12176.1 Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: domain Description: his_ut_repres Location: 12400-13072 bp Feature: gene Location: 13312-13884 bp Ori: ONU12177.1 Feature: domain Description: FIN Location: 13498-13849 bp Feature: domain Description: FIN Location: 13498-13849 bp Feature: gene Location: 14138-15487 bp Ori: ONU12178.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14603-15 239 bp Feature: gene Location: 15460-15666 bp Feature: gene Location: 15813-16142 bp Ori: ONU12180.1 Feature: domain Description: Histone_HNS Location: 15834-16071 bp Feature: domain Description: Histone_HNS Location: 15 834-16071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: MUSU01000010.1 Burkholderia cenocepacia strain VC7559 VC7559_contig-1, whole genome shotgun sequence (306777 bp)
Overview 1 RT 1: 198302-202714 bp Neighborhood of RT #1 [198302, 202714] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 198302-198766 bp Ori: ONU23075.1 Feature: domain Description: DUF1566 Location: 198563-198743 bp Feature: domain Description: DUF156 6 Location: 19856 3-198743 bp Feature: gene Location: 198781-199137 bp Ori: ONU23076.1 Feature: domain Description: Avd_like Location: 198808-199114 bp Feature: domain Description: Avd_like Location: 198808-199114 bp Feature: gene Location: 199481-200479 bp Ori: ONU23077.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 199574-200261 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 199574-20026 1 bp Feature: gene Location: 200538-202439 bp Ori: ONU23078.1 Feature: domain Description: Dcm Location: 200571-201177 bp Feature: domain Description: Dcm Location: 200571-201177 bp Feature: domain Description: Dcm Location: 202176-202335 bp Feature: domain Description: Dcm Location: 202176 -202335 bp Feature: gene Location: 202454-202714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)