myRT

myRT report for GCA_001992625.1_ASM199262v1

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Seq: MUTZ01000098.1 Burkholderia cenocepacia strain VC7881 VC7881_contig-2000012, whole genome shotgun sequence (101627 bp)
Overview 1 RT 1: 98514-101382 bp Neighborhood of RT #1 [98514, 101540] PRK08133 RVT-GII GIIM Feature: gene Location: 98514-99704 bp Feature: domain Description: PRK08133 Location: 98520-99699 bp Feature: domain Description: PRK081 33 Location: 98520-99699 bp Feature: gene Location: 99773-100102 bp Feature: gene Location: 100173-101540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100506-101121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00506-1 01 1 21 bp Feature: domain Description: GIIM Note: maturase Location: 101181-101382 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 1 81 -1 01 382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated)

Seq: MUTZ01000061.1 Burkholderia cenocepacia strain VC7881 VC7881_contig-6000006, whole genome shotgun sequence (4104 bp)
Overview 1 RT 1: 656-3859 bp Neighborhood of RT #1 [656, 4017] ALDH_F7_AASADH RVT-GII GIIM Feature: gene Location: 656-2167 bp Feature: domain Description: ALDH_F7_AASADH Location: 710-2126 bp Feature: domain Description: ALDH_F7_AASADH Location: 710-2 12 6 bp Feature: gene Location: 2250-2579 bp Feature: gene Location: 2650-4017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2983-3598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 983-3598 bp Feature: domain Description: GIIM Note: maturase Location: 3658-3859 bp Feature: domain Description: GIIM Note: maturase Location: 3658-3859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ALDH_F7_AASADH (cd07130)

Seq: MUTZ01000113.1 Burkholderia cenocepacia strain VC7881 VC7881_contig-2000014, whole genome shotgun sequence (52686 bp)
Overview 1 RT 1: 1-3872 bp Neighborhood of RT #1 [1, 3886] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 1-330 bp Feature: gene Location: 401-1768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734-1349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 4-13 49 bp Feature: domain Description: GIIM Note: maturase Location: 1409-1610 bp Feature: domain Description: GIIM Note: maturase Location: 1409-1610 bp Feature: gene Location: 1888-2853 bp Feature: domain Description: GDP_MD_SDR_e Location: 1924-2818 bp Feature: domain Description: GDP_MD_SDR_e Location: 1924-2818 bp Feature: gene Location: 2840-3886 bp Feature: domain Description: Gmd Location: 2855-3872 bp Feature: domain Description: Gmd Location: 2855-3 872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), Gmd (COG1089), RVT-GII, GIIM (pfam08388)

Seq: MUTZ01000053.1 Burkholderia cenocepacia strain VC7881 VC7881_contig-13000005, whole genome shotgun sequence (228128 bp)
Overview 1 RT 1: 105381-110639 bp Neighborhood of RT #1 [105381, 110662] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 105381-106136 bp Feature: domain Description: his_ut_repres Location: 105459-106131 bp Feature: domain Description: his_ut_repres Location: 1054 59-106131 bp Feature: gene Location: 106359-106931 bp Feature: domain Description: FIN Location: 106539-106896 bp Feature: domain Description: FIN Location: 106539-106896 bp Feature: gene Location: 107184-108533 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107649-108285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10764 9-108285 bp Feature: gene Location: 108852-109181 bp Feature: domain Description: Histone_HNS Location: 108873-109110 bp Feature: domain Description: Histone_HNS Location: 108873-109110 bp Feature: gene Location: 109415-110662 bp Feature: domain Description: MFS_MucK Location: 109505-110639 bp Feature: domain Description: MFS_MucK Location: 109505-110639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: MUTZ01000026.1 Burkholderia cenocepacia strain VC7881 VC7881_contig-16000001, whole genome shotgun sequence (59173 bp)
Overview 1 RT 1: 52917-59165 bp Neighborhood of RT #1 [52917, 59165] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 52917-54335 bp Feature: domain Description: MFS_SV2_like Location: 53037-54285 bp Feature: domain Description: MFS_SV2_like Location: 5 3037-5 4285 bp Feature: gene Location: 54792-57254 bp Feature: domain Description: MscK Location: 54888-57210 bp Feature: domain Description: MscK Location: 5 4888-5 7210 bp Feature: gene Location: 57398-58765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57731-58346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7731-5 8346 bp Feature: domain Description: GIIM Note: maturase Location: 58406-58607 bp Feature: domain Description: GIIM Note: maturase Location: 5 8406-5 8607 bp Feature: gene Location: 58836-59165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUTZ01000050.1 Burkholderia cenocepacia strain VC7881 VC7881_contig-5000005, whole genome shotgun sequence (5789 bp)
Overview 1 RT 1: 9-3238 bp Neighborhood of RT #1 [9, 3246] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 9-338 bp Feature: gene Location: 409-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1417-16 18 bp Feature: gene Location: 1884-2771 bp Feature: domain Description: RsmI Location: 1932-2745 bp Feature: domain Description: RsmI Location: 1932-2745 bp Feature: gene Location: 2770-3246 bp Feature: domain Description: PRK14673 Location: 2821-3238 bp Feature: domain Description: PRK146 73 Location: 2821-3238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmI (COG0313), PRK14673 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)