myRT

myRT report for GCA_001992655.1_ASM199265v1

Download annotations/find similar RTs

Seq: MUUB01000032.1 Burkholderia cenocepacia strain VC8672 VC8672_contig-2000005, whole genome shotgun sequence (5754 bp)
Overview 1 RT 1: 55-3203 bp Neighborhood of RT #1 [55, 3211] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 55-303 bp Feature: gene Location: 374-1741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1 322 bp Feature: domain Description: GIIM Note: maturase Location: 1382-1583 bp Feature: domain Description: GIIM Note: maturase Location: 1 382-1 583 bp Feature: gene Location: 1849-2736 bp Feature: domain Description: RsmI Location: 1897-2710 bp Feature: domain Description: RsmI Location: 1 897-271 0 bp Feature: gene Location: 2735-3211 bp Feature: domain Description: PRK14673 Location: 2786-3203 bp Feature: domain Description: PRK1 4673 Location: 2786-3203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmI (COG0313), PRK14673 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: MUUB01000002.1 Burkholderia cenocepacia strain VC8672 VC8672_contig-1000000, whole genome shotgun sequence (52661 bp)
Overview 1 RT 1: 48803-52607 bp Neighborhood of RT #1 [48803, 52607] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 48803-49849 bp Feature: domain Description: Gmd Location: 48818-49835 bp Feature: domain Description: Gmd Location: 48818-49835 bp Feature: gene Location: 49836-50801 bp Feature: domain Description: GDP_MD_SDR_e Location: 49872-50766 bp Feature: domain Description: GDP_MD_SDR_e Location: 49872 -50766 bp Feature: gene Location: 50921-52288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51254-51869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512 54-51869 bp Feature: domain Description: GIIM Note: maturase Location: 51929-52130 bp Feature: domain Description: GIIM Note: maturase Location: 5192 9-52 130 bp Feature: gene Location: 52359-52607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)

Seq: MUUB01000083.1 Burkholderia cenocepacia strain VC8672 VC8672_contig-2000015, whole genome shotgun sequence (339817 bp)
Overview 1 RT 1: 127386-132644 bp Neighborhood of RT #1 [127386, 132667] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 127386-128141 bp Feature: domain Description: his_ut_repres Location: 127464-128136 bp Feature: domain Description: his_ut_repres Location: 127464-12813 6 bp Feature: gene Location: 128364-128936 bp Feature: domain Description: FIN Location: 128544-128901 bp Feature: domain Description: FIN Location: 128544-128901 bp Feature: gene Location: 129189-130538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129654-130290 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129654-13 0290 bp Feature: gene Location: 130857-131186 bp Feature: domain Description: Histone_HNS Location: 130878-131115 bp Feature: domain Description: Histone_HNS Location: 13 0878-13 1115 bp Feature: gene Location: 131420-132667 bp Feature: domain Description: MFS_MucK Location: 131510-132644 bp Feature: domain Description: MFS_MucK Location: 13 1510-13 2644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: MUUB01000060.1 Burkholderia cenocepacia strain VC8672 VC8672_contig-1000010, whole genome shotgun sequence (59300 bp)
Overview 1 RT 1: 53079-59246 bp Neighborhood of RT #1 [53079, 59246] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 53079-54497 bp Feature: domain Description: MFS_SV2_like Location: 53199-54447 bp Feature: domain Description: MFS_SV2_like Location: 53199-54 4 4 7 bp Feature: gene Location: 54954-57416 bp Feature: domain Description: MscK Location: 55050-57372 bp Feature: domain Description: MscK Location: 55050-57372 bp Feature: gene Location: 57560-58927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57893-58508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57893-58508 bp Feature: domain Description: GIIM Note: maturase Location: 58568-58769 bp Feature: domain Description: GIIM Note: maturase Location: 58568-58769 bp Feature: gene Location: 58998-59246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUUB01000047.1 Burkholderia cenocepacia strain VC8672 VC8672_contig-8000007, whole genome shotgun sequence (27201 bp)
Overview 1 RT 1: 1-2112 bp Neighborhood of RT #1 [1, 2147] RVT-GII RlpA Feature: gene Location: 1-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-949 bp Feature: gene Location: 1137-1466 bp Feature: gene Location: 1536-2147 bp Feature: domain Description: RlpA Location: 1605-2112 bp Feature: domain Description: RlpA Location: 1605 -2112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RlpA (COG0797)