myRT

myRT report for GCA_001992675.1_ASM199267v1

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Seq: MUUC01000137.1 Burkholderia cenocepacia strain VC9160 VC9160_contig-15, whole genome shotgun sequence (312130 bp)
Overview 1 RT 1: 127386-132644 bp Neighborhood of RT #1 [127386, 132667] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 127386-128141 bp Feature: domain Description: his_ut_repres Location: 127464-128136 bp Feature: domain Description: his_ut_repres Location: 1 27464-1 281 36 bp Feature: gene Location: 128364-128936 bp Feature: domain Description: FIN Location: 128544-128901 bp Feature: domain Description: FIN Location: 1 28544-1 28901 bp Feature: gene Location: 129189-130538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129654-130290 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 29654-1 30290 bp Feature: gene Location: 130857-131186 bp Feature: domain Description: Histone_HNS Location: 130878-131115 bp Feature: domain Description: Histone_HNS Location: 1 30878-1 31 1 1 5 bp Feature: gene Location: 131420-132667 bp Feature: domain Description: MFS_MucK Location: 131510-132644 bp Feature: domain Description: MFS_MucK Location: 1 31 51 0-1 32644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: MUUC01000046.1 Burkholderia cenocepacia strain VC9160 VC9160_contig-3000005, whole genome shotgun sequence (5789 bp)
Overview 1 RT 1: 9-3238 bp Neighborhood of RT #1 [9, 3246] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 9-338 bp Feature: gene Location: 409-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 -1357 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: gene Location: 1884-2771 bp Feature: domain Description: RsmI Location: 1932-2745 bp Feature: domain Description: RsmI Location: 1932 -2 745 bp Feature: gene Location: 2770-3246 bp Feature: domain Description: PRK14673 Location: 2821-3238 bp Feature: domain Description: PRK14673 Location: 2 82 1-32 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmI (COG0313), PRK14673 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: MUUC01000102.1 Burkholderia cenocepacia strain VC9160 VC9160_contig-3000010, whole genome shotgun sequence (60166 bp)
Overview 1 RT 1: 53910-60158 bp Neighborhood of RT #1 [53910, 60158] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 53910-55328 bp Feature: domain Description: MFS_SV2_like Location: 54030-55278 bp Feature: domain Description: MFS_SV2_like Location: 5403 0-55278 bp Feature: gene Location: 55785-58247 bp Feature: domain Description: MscK Location: 55881-58203 bp Feature: domain Description: MscK Location: 55881-58203 bp Feature: gene Location: 58391-59758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58724-59339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58724-593 3 9 bp Feature: domain Description: GIIM Note: maturase Location: 59399-59600 bp Feature: domain Description: GIIM Note: maturase Location: 593 99-59600 bp Feature: gene Location: 59829-60158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUUC01000132.1 Burkholderia cenocepacia strain VC9160 VC9160_contig-2000014, whole genome shotgun sequence (52690 bp)
Overview 1 RT 1: 9-3880 bp Neighborhood of RT #1 [9, 3894] RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 9-338 bp Feature: gene Location: 409-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 2-1357 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 14 17-1618 bp Feature: gene Location: 1896-2861 bp Feature: domain Description: GDP_MD_SDR_e Location: 1932-2826 bp Feature: domain Description: GDP_MD_SDR_e Location: 1932-2826 bp Feature: gene Location: 2848-3894 bp Feature: domain Description: Gmd Location: 2863-3880 bp Feature: domain Description: Gmd Location: 2863-3880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_MD_SDR_e (cd05260), Gmd (COG1089), RVT-GII, GIIM (pfam08388)