myRT

myRT report for GCA_001992695.1_ASM199269v1

Download annotations/find similar RTs

Seq: MUUD01000070.1 Burkholderia cenocepacia strain VC9958 VC9958_contig-9000007, whole genome shotgun sequence (239317 bp)
Overview 1 RT 1: 100333-105591 bp Neighborhood of RT #1 [100333, 105614] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 100333-101088 bp Feature: domain Description: his_ut_repres Location: 100411-101083 bp Feature: domain Description: his_ut_repres Location: 1 0041 1 -1 01 083 bp Feature: gene Location: 101311-101883 bp Feature: domain Description: FIN Location: 101491-101848 bp Feature: domain Description: FIN Location: 1 01 491 -1 01 848 bp Feature: gene Location: 102136-103485 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102601-103237 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 02601 -1 03237 bp Feature: gene Location: 103804-104133 bp Feature: domain Description: Histone_HNS Location: 103825-104062 bp Feature: domain Description: Histone_HNS Location: 1 03825-1 04062 bp Feature: gene Location: 104367-105614 bp Feature: domain Description: MFS_MucK Location: 104457-105591 bp Feature: domain Description: MFS_MucK Location: 1 04457-1 05591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: MUUD01000052.1 Burkholderia cenocepacia strain VC9958 VC9958_contig-4000005, whole genome shotgun sequence (5789 bp)
Overview 1 RT 1: 9-3238 bp Neighborhood of RT #1 [9, 3246] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 9-338 bp Feature: gene Location: 409-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 -1357 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: gene Location: 1884-2771 bp Feature: domain Description: RsmI Location: 1932-2745 bp Feature: domain Description: RsmI Location: 1932 -2 745 bp Feature: gene Location: 2770-3246 bp Feature: domain Description: PRK14673 Location: 2821-3238 bp Feature: domain Description: PRK14673 Location: 2 82 1-32 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmI (COG0313), PRK14673 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)