myRT

myRT report for GCA_001992735.1_ASM199273v1

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Seq: MUUG01000040.1 Burkholderia cenocepacia strain VC14488 VC14488_contig-5, whole genome shotgun sequence (343002 bp)
Overview 1 RT 1: 210336-215612 bp Neighborhood of RT #1 [210336, 215617] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 210336-211583 bp Feature: domain Description: MFS_MucK Location: 210426-211560 bp Feature: domain Description: MFS_MucK Location: 21 0426-21 1 560 bp Feature: gene Location: 211817-212146 bp Feature: domain Description: Histone_HNS Location: 211838-212075 bp Feature: domain Description: Histone_HNS Location: 21 1 838-21 2075 bp Feature: gene Location: 212465-213814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 212930-213566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 2930-21 3566 bp Feature: gene Location: 214067-214639 bp Feature: domain Description: FIN Location: 214247-214604 bp Feature: domain Description: FIN Location: 21 4247-21 4604 bp Feature: gene Location: 214862-215617 bp Feature: domain Description: his_ut_repres Location: 214940-215612 bp Feature: domain Description: his_ut_repres Location: 21 4940-21 561 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUUG01000013.1 Burkholderia cenocepacia strain VC14488 VC14488_contig-4000001, whole genome shotgun sequence (59233 bp)
Overview 1 RT 1: 52977-59225 bp Neighborhood of RT #1 [52977, 59225] MFS_SV2_like MscK RVT-GII GIIM Feature: gene Location: 52977-54395 bp Feature: domain Description: MFS_SV2_like Location: 53097-54345 bp Feature: domain Description: MFS_SV2 _like Location: 53097-54345 bp Feature: gene Location: 54852-57314 bp Feature: domain Description: MscK Location: 54948-57270 bp Feature: domain Description: MscK Location: 54948-572 70 bp Feature: gene Location: 57458-58825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57791-58406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57791-58406 bp Feature: domain Description: GIIM Note: maturase Location: 58466-58667 bp Feature: domain Description: GIIM Note: maturase Location: 58466-58667 bp Feature: gene Location: 58896-59225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_SV2_like (cd17316), MscK (COG3264), RVT-GII, GIIM (pfam08388)

Seq: MUUG01000042.1 Burkholderia cenocepacia strain VC14488 VC14488_contig-2000005, whole genome shotgun sequence (5789 bp)
Overview 1 RT 1: 9-3238 bp Neighborhood of RT #1 [9, 3246] RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 9-338 bp Feature: gene Location: 409-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-13 57 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1417-1618 bp Feature: gene Location: 1884-2771 bp Feature: domain Description: RsmI Location: 1932-2745 bp Feature: domain Description: RsmI Location: 193 2-2745 bp Feature: gene Location: 2770-3246 bp Feature: domain Description: PRK14673 Location: 2821-3238 bp Feature: domain Description: PRK14673 Location: 2821-3 23 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmI (COG0313), PRK14673 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: MUUG01000035.1 Burkholderia cenocepacia strain VC14488 VC14488_contig-5000003, whole genome shotgun sequence (52704 bp)
Overview 1 RT 1: 48811-52696 bp Neighborhood of RT #1 [48811, 52696] Gmd GDP_MD_SDR_e RVT-GII GIIM Feature: gene Location: 48811-49857 bp Feature: domain Description: Gmd Location: 48826-49843 bp Feature: domain Description: Gmd Location: 4 8826-4 984 3 bp Feature: gene Location: 49844-50809 bp Feature: domain Description: GDP_MD_SDR_e Location: 49880-50774 bp Feature: domain Description: GDP_MD_SDR_e Location: 4 9880-50774 bp Feature: gene Location: 50929-52296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51262-51877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51262-51877 bp Feature: domain Description: GIIM Note: maturase Location: 51937-52138 bp Feature: domain Description: GIIM Note: maturase Location: 51937-52138 bp Feature: gene Location: 52367-52696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388)