myRT

myRT report for GCA_001992765.1_ASM199276v1

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Seq: MUUK01000157.1 Burkholderia cenocepacia strain VC7576 VC7576_contig-13000011, whole genome shotgun sequence (128923 bp)
Overview 1 RT 1: 1-7680 bp Neighborhood of RT #1 [1, 7727] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 1-814 bp Ori: ONW98411.1 Feature: domain Description: COG3547 Location: 25-811 bp Feature: domain Description: COG3547 Location: 25-81 1 bp Feature: gene Location: 1149-2204 bp Ori: ONW98412.1 Feature: domain Description: DEXHc_Snf Location: 1368-1623 bp Feature: domain Description: DEXHc_Snf Location: 1 368-1 623 bp Feature: gene Location: 2800-3870 bp Feature: domain Description: RVT_N Location: 2857-3094 bp Feature: domain Description: RVT_N Location: 2857-3094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3145-3796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 45-3796 bp Feature: gene Location: 4001-6916 bp Ori: ONW98413.1 Feature: domain Description: DUF4158 Location: 4040-4505 bp Feature: domain Description: DUF41 58 Location: 4040-4505 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5693-6839 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5693-6839 bp Feature: gene Location: 7062-7727 bp Feature: domain Description: GIIM Note: maturase Location: 7065-7290 bp Feature: domain Description: GIIM Note: maturase Location: 7065-7290 bp Feature: domain Description: HNHc Note: nucleases Location: 7524-7680 bp Feature: domain Description: HNHc Note: nucleases Location: 7524-7680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUUK01000084.1 Burkholderia cenocepacia strain VC7576 VC7576_contig-7, whole genome shotgun sequence (141690 bp)
Overview 1 RT 1: 125549-129364 bp Neighborhood of RT #1 [125549, 129369] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125549-125878 bp Ori: ONX04270.1 Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: domain Description: Histone_HNS Location: 12 5570-12 5807 bp Feature: gene Location: 126025-126231 bp Feature: gene Location: 126204-127553 bp Ori: ONX04272.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 6669-12 7305 bp Feature: gene Location: 127807-128379 bp Ori: ONX04273.1 Feature: domain Description: FIN Location: 127993-128344 bp Feature: domain Description: FIN Location: 12 7993-12 8344 bp Feature: gene Location: 128614-129369 bp Ori: ONX04274.1 Feature: domain Description: his_ut_repres Location: 128692-129364 bp Feature: domain Description: his_ut_repres Location: 12 8692 -12 9364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUUK01000053.1 Burkholderia cenocepacia strain VC7576 VC7576_contig-1000004, whole genome shotgun sequence (118031 bp)
Overview 1 RT 1: 1-7680 bp Neighborhood of RT #1 [1, 7727] COG3547 DEXHc_Snf RVT_N RVT-GII DUF4158 DDE_Tnp_Tn3 GIIM HNHc Feature: gene Location: 1-814 bp Ori: ONX07408.1 Feature: domain Description: COG3547 Location: 25-811 bp Feature: domain Description: COG3 547 Location: 25-811 bp Feature: gene Location: 1149-2204 bp Ori: ONX07409.1 Feature: domain Description: DEXHc_Snf Location: 1368-1623 bp Feature: domain Description: DEXHc_Snf Location: 13 68-1623 bp Feature: gene Location: 2800-3870 bp Feature: domain Description: RVT_N Location: 2857-3094 bp Feature: domain Description: RVT_N Location: 2857-3 094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3145-3796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 145-3 796 bp Feature: gene Location: 4001-6916 bp Ori: ONX07410.1 Feature: domain Description: DUF4158 Location: 4040-4505 bp Feature: domain Description: DUF4158 Location: 4040-4505 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5693-6839 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5693 -683 9 bp Feature: gene Location: 7062-7727 bp Feature: domain Description: GIIM Note: maturase Location: 7065-7290 bp Feature: domain Description: GIIM Note: maturase Location: 7065-7290 bp Feature: domain Description: HNHc Note: nucleases Location: 7524-7680 bp Feature: domain Description: HNHc Note: nucleases Location: 7524-7680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), GIIM (pfam08388), HNHc (smart00507)

Seq: MUUK01000204.1 Burkholderia cenocepacia strain VC7576 VC7576_contig-2000015, whole genome shotgun sequence (46590 bp)
Overview 1 RT 1: 41412-46525 bp Neighborhood of RT #1 [41412, 46590] HATPase_c_3 RVT-UG5 rve_3 Feature: gene Location: 41412-42101 bp Feature: gene Location: 42353-44368 bp Ori: ONW93828.1 Feature: domain Description: HATPase_c_3 Location: 42422-42746 bp Feature: domain Description: HATPase_c_3 Location: 4 24 22-4 274 6 bp Feature: gene Location: 44896-46350 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44905-45379 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 4 905-4 5379 bp Feature: gene Location: 46399-46590 bp Ori: ONW93829.1 Feature: domain Description: rve_3 Location: 46402-46525 bp Feature: domain Description: rve_3 Location: 4 64 02-4 6525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, rve_3 (pfam13683)

Seq: MUUK01000002.1 Burkholderia cenocepacia strain VC7576 VC7576_contig-1000000, whole genome shotgun sequence (143625 bp)
Overview 1 RT 1: 29448-33837 bp Neighborhood of RT #1 [29448, 33860] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 29448-29708 bp Feature: gene Location: 29723-31624 bp Ori: ONX13016.1 Feature: domain Description: Dcm Location: 29756-30362 bp Feature: domain Description: Dcm Location: 2975 6-30362 bp Feature: domain Description: Dcm Location: 31361-31520 bp Feature: domain Description: Dcm Location: 31361-315 20 bp Feature: gene Location: 31683-32681 bp Ori: ONX13017.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31776-32463 bp Feature: gene Location: 33025-33381 bp Ori: ONX13018.1 Feature: domain Description: Avd_like Location: 33052-33358 bp Feature: domain Description: Avd_like Location: 3305 2-3335 8 bp Feature: gene Location: 33396-33860 bp Ori: ONX13019.1 Feature: domain Description: DUF1566 Location: 33657-33837 bp Feature: domain Description: DUF15 66 Location: 3365 7-33837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUUK01000050.1 Burkholderia cenocepacia strain VC7576 VC7576_contig-5000003, whole genome shotgun sequence (93805 bp)
Overview 1 RT 1: 87052-91660 bp Neighborhood of RT #1 [87052, 91668] COG3547 RVT-GII GIIM RsmI PRK14673 Feature: gene Location: 87052-87246 bp Feature: gene Location: 87626-88660 bp Ori: ONX07777.1 Feature: domain Description: COG3547 Location: 87641-88604 bp Feature: domain Description: COG3547 Location: 876 41-886 04 bp Feature: gene Location: 88831-90198 bp Ori: ONX07778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89164-89779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8916 4-89779 bp Feature: domain Description: GIIM Note: maturase Location: 89839-90040 bp Feature: domain Description: GIIM Note: maturase Location: 89839-90040 bp Feature: gene Location: 90306-91193 bp Ori: ONX07779.1 Feature: domain Description: RsmI Location: 90354-91167 bp Feature: domain Description: RsmI Location: 90354-9116 7 bp Feature: gene Location: 91192-91668 bp Ori: ONX07780.1 Feature: domain Description: PRK14673 Location: 91243-91660 bp Feature: domain Description: PRK146 73 Location: 91243-916 6 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional)