myRT

myRT report for GCA_001992785.1_ASM199278v1

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Seq: MUUL01000077.1 Burkholderia cenocepacia strain VC8402 VC8402_contig-8000009, whole genome shotgun sequence (305955 bp)
Overview 1 RT 1: 103252-107641 bp Neighborhood of RT #1 [103252, 107664] Dcm Dcm RVT-DGRs Avd_like DUF1566 Feature: gene Location: 103252-103512 bp Feature: gene Location: 103527-105428 bp Ori: ONX22462.1 Feature: domain Description: Dcm Location: 103560-104166 bp Feature: domain Description: Dcm Location: 1 03560-1 041 66 bp Feature: domain Description: Dcm Location: 105165-105324 bp Feature: domain Description: Dcm Location: 1 051 65-1 05324 bp Feature: gene Location: 105487-106485 bp Ori: ONX22463.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 105580-106267 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 05580-1 06267 bp Feature: gene Location: 106829-107185 bp Ori: ONX22464.1 Feature: domain Description: Avd_like Location: 106856-107162 bp Feature: domain Description: Avd_like Location: 1 06856-1 071 62 bp Feature: gene Location: 107200-107664 bp Ori: ONX22465.1 Feature: domain Description: DUF1566 Location: 107461-107641 bp Feature: domain Description: DUF1 566 Location: 1 07461 -1 07641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: MUUL01000060.1 Burkholderia cenocepacia strain VC8402 VC8402_contig-8, whole genome shotgun sequence (141243 bp)
Overview 1 RT 1: 125549-129364 bp Neighborhood of RT #1 [125549, 129369] Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 125549-125878 bp Ori: ONX24119.1 Feature: domain Description: Histone_HNS Location: 125570-125807 bp Feature: domain Description: Histone_HNS Location: 12 5570-12 5807 bp Feature: gene Location: 126025-126231 bp Feature: gene Location: 126204-127553 bp Ori: ONX24121.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126669-127305 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 6669-12 7305 bp Feature: gene Location: 127807-128379 bp Ori: ONX24122.1 Feature: domain Description: FIN Location: 127993-128344 bp Feature: domain Description: FIN Location: 12 7993-12 8344 bp Feature: gene Location: 128614-129369 bp Ori: ONX24123.1 Feature: domain Description: his_ut_repres Location: 128692-129364 bp Feature: domain Description: his_ut_repres Location: 12 8692 -12 9364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MUUL01000040.1 Burkholderia cenocepacia strain VC8402 VC8402_contig-8000005, whole genome shotgun sequence (4672 bp)
Overview 1 RT 1: 1439-4427 bp Neighborhood of RT #1 [1439, 4585] COG3547 RVT-GII GIIM Feature: gene Location: 1439-1633 bp Feature: gene Location: 2013-3047 bp Ori: ONX26779.1 Feature: domain Description: COG3547 Location: 2028-2991 bp Feature: domain Description: COG3 547 Location: 2028-2991 bp Feature: gene Location: 3218-4585 bp Ori: ONX26780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3551-4166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 551-4166 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Feature: domain Description: GIIM Note: maturase Location: 4226-4427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: MUUL01000005.1 Burkholderia cenocepacia strain VC8402 VC8402_contig-4000000, whole genome shotgun sequence (46864 bp)
Overview 1 RT 1: 41437-46832 bp Neighborhood of RT #1 [41437, 46864] HATPase_c_3 RVT-UG5 Tra5 Feature: gene Location: 41437-42126 bp Feature: gene Location: 42378-44393 bp Ori: ONX31809.1 Feature: domain Description: HATPase_c_3 Location: 42447-42771 bp Feature: domain Description: HATPase_c_3 Location: 4 24 4 7-4 2771 bp Feature: gene Location: 44921-46375 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 44930-45404 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4 4 930-4 54 04 bp Feature: gene Location: 46424-46864 bp Ori: ONX31810.1 Feature: domain Description: Tra5 Location: 46427-46832 bp Feature: domain Description: Tra5 Location: 4 64 27-4 6832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), RVT-UG5, Tra5 (COG2801)

Seq: MUUL01000087.1 Burkholderia cenocepacia strain VC8402 VC8402_contig-1000011, whole genome shotgun sequence (30337 bp)
Overview 1 RT 1: 26573-30272 bp Neighborhood of RT #1 [26573, 30328] PRK12511 COG4315 RVT-GII GIIM COG3547 Feature: gene Location: 26573-27088 bp Ori: ONX20655.1 Feature: domain Description: PRK12511 Location: 26585-27080 bp Feature: domain Description: PRK125 11 Location: 265 85 -27080 bp Feature: gene Location: 27116-27475 bp Ori: ONX20656.1 Feature: domain Description: COG4315 Location: 27137-27473 bp Feature: domain Description: COG4315 Location: 27137-27473 bp Feature: gene Location: 27756-29123 bp Ori: ONX20657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28089-28704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28089-28704 bp Feature: domain Description: GIIM Note: maturase Location: 28764-28965 bp Feature: domain Description: GIIM Note: maturase Location: 28764-28965 bp Feature: gene Location: 29294-30328 bp Ori: ONX20658.1 Feature: domain Description: COG3547 Location: 29309-30272 bp Feature: domain Description: COG35 47 Location: 29309-30272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: MUUL01000096.1 Burkholderia cenocepacia strain VC8402 VC8402_contig-10000011, whole genome shotgun sequence (249287 bp)
Overview 1 RT 1: 242234-248231 bp Neighborhood of RT #1 [242234, 248812] GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII DEXHc_Snf Feature: gene Location: 242234-242899 bp Feature: domain Description: GIIM Note: maturase Location: 242237-242462 bp Feature: domain Description: GIIM Note: maturase Location: 242237-24246 2 bp Feature: domain Description: HNHc Note: nucleases Location: 242696-242852 bp Feature: domain Description: HNHc Note: nucleases Location: 2426 96 -242852 bp Feature: gene Location: 243045-245960 bp Ori: ONX19467.1 Feature: domain Description: DUF4158 Location: 243084-243549 bp Feature: domain Description: DUF4158 Location: 243084-243549 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 244737-245883 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 244737-245883 bp Feature: gene Location: 246091-247161 bp Feature: domain Description: RVT_N Location: 246148-246385 bp Feature: domain Description: RVT_N Location: 246 148-246 385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246436-247087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246 436 -247087 bp Feature: gene Location: 247757-248812 bp Ori: ONX19468.1 Feature: domain Description: DEXHc_Snf Location: 247976-248231 bp Feature: domain Description: DEXHc_Snf Location: 247976 -248231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919)